Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K05
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    40   1e-05
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    27   0.13 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.92 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.6  

>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +2

Query: 314 VSLRSGEFMVVACPGSRNHIVLGNETGNGRQFDVLDAKCVEKTSFLLGGWRGEFRNVTCK 493
           V + +GE ++++CPG      +  +  N  Q  +L   C   T F  G    +FR + C 
Sbjct: 9   VEINNGETIIISCPGG----FVMEDANNLTQSTILTT-CESNTDFSFGSKTIDFRKIQCS 63

Query: 494 TQPWTTV-YDTKKSCHLNSKLYRIGYEIQK--AFYSLYEACXD 613
             P     Y  K +C +  ++  +GY+++    F   +  C D
Sbjct: 64  NSPLRKARYTEKGTCKMGREI-EVGYDLKSPDRFVRQFTICFD 105


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 468 PLQPPNRNDVFSTHLASKTSNCLPFPVSLPRTMWLRLP 355
           P +P ++N     HL S  +NC P P    + + L  P
Sbjct: 75  PFRPMHQNSYTGYHLGSYAANCPPSPKDDEKCLSLERP 112


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 470 EFRNVTCKTQPWTTVYDTKKSCHLNSKLYRIGYEIQKAFYSLYEACXDLSEMKTH 634
           E + +TC   P+ T Y      HL +      ++  K  Y+        S MK+H
Sbjct: 227 EDKRLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKSH 281



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 495 VLHVTFLNSPLQPPNRNDVFS 433
           V H  + ++PL PPN   + S
Sbjct: 96  VPHFAYNHNPLTPPNSEPLVS 116


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 60  RANYLRVGGN 31
           RA YLRVGGN
Sbjct: 293 RAPYLRVGGN 302


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 60  RANYLRVGGN 31
           RA YLRVGGN
Sbjct: 300 RAPYLRVGGN 309


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 60  RANYLRVGGN 31
           RA YLRVGGN
Sbjct: 301 RAPYLRVGGN 310


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 320 LRSGEFMVVACPGSRNHIV 376
           + +GE+ ++  PG +N IV
Sbjct: 172 ITNGEWYLIGMPGKKNTIV 190


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 320 LRSGEFMVVACPGSRNHIV 376
           + +GE+ ++  PG +N IV
Sbjct: 172 ITNGEWYLIGMPGKKNTIV 190


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 320 LRSGEFMVVACPGSRNHIV 376
           + +GE+ ++  PG +N IV
Sbjct: 172 ITNGEWYLIGMPGKKNTIV 190


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 320 LRSGEFMVVACPGSRNHIV 376
           + +GE+ ++  PG +N IV
Sbjct: 172 ITNGEWYLIGMPGKKNTIV 190


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 320 LRSGEFMVVACPGSRNHIV 376
           + +GE+ ++  PG +N IV
Sbjct: 172 ITNGEWYLIGMPGKKNTIV 190


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 462 GGVSLETSRAKLSRGPRCTTRKRVAI*TVSCTGSD 566
           GG +L  S     R   CT   RV   +V   G D
Sbjct: 127 GGANLTNSLTGPVRPAACTPDSRVGYGSVGLVGGD 161



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 394 SRFVAENDVVAASGAGHHHKFTAS 323
           S F   +   + S AGHHH+ +A+
Sbjct: 8   SGFYGSHHHQSGSVAGHHHEQSAA 31


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 87  TVRFATARCHYHIFLKCLYLDIHLNF 164
           TV      C YH F   +   +HL F
Sbjct: 157 TVHLLFLLCIYHFFCAFIIFTMHLLF 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,717
Number of Sequences: 336
Number of extensions: 3266
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)