Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K05
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.3  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   3.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   3.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.9  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 299 SESRTDCSLCRPAMDYRNRSSMTGRNQHLRRNCSKT 192
           S+    C  C   + + N S  T  N H+ R CS T
Sbjct: 587 SDFSETCPACEATVQFNNTSLATCDNGHVWRRCSVT 622


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 353 PGSRNHIVLGNETGNGRQFDVLDAKCVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKS 532
           P SR   +L  + GN    D     C+ +      G       ++C TQP + VY+T+ +
Sbjct: 66  PLSRQSTILDADEGNQDVSDTTPNACLNE------GRHSPKSAISCVTQPVSPVYNTRAA 119

Query: 533 CHLNS 547
            +L +
Sbjct: 120 ANLRN 124


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 281 CSLCRPAMDYRNRSSMTGRNQHLRRNCSKTNKPLKN 174
           C L    ++  NR +   +NQ LRR+  K NK  KN
Sbjct: 796 CKLSENQLEIYNRYAALQKNQQLRRD-DKRNKRSKN 830


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 110 MSLSYIFEMSLFRYSFKFLFMSFLMAYLFLNSY 208
           + + Y  EM L  Y F FL+      Y F+NSY
Sbjct: 223 IGILYTLEMLLKIYLFGFLYDGSSSFYDFINSY 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,209
Number of Sequences: 5004
Number of extensions: 54225
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)