Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K05
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     30   1.3  
07_03_1292 - 25558643-25559376,25559989-25560097,25560578-255606...    29   3.1  
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080...    29   4.1  
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49...    27   9.4  

>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 425 KCVEKTSF-LLGGWRGEFRNVTCKTQPWTTVYDTKKSCHLNSKLYRI 562
           KC  K S  ++G W+ E+   T KT  W T   T     LNSKL  +
Sbjct: 458 KCKIKGSHTIVGLWKHEYWQPTMKTSDWYTKSCTYSWVSLNSKLINL 504


>07_03_1292 -
           25558643-25559376,25559989-25560097,25560578-25560676,
           25560797-25560893,25560973-25561027,25561072-25561187,
           25561445-25561562,25562369-25562684
          Length = 547

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 459 AGGVSLETSRAKLSRGPRCTTRKRV 533
           AGG + +TSRA+L R  R T R R+
Sbjct: 360 AGGQNTKTSRARLDRSDRSTNRARM 384


>01_05_0057 +
           17705023-17705143,17706186-17706538,17708002-17708044,
           17708698-17709140
          Length = 319

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 524 SCRTPWSTAEFCT*RF*THPSSL 456
           SCR P  TA+FCT R+   P+S+
Sbjct: 26  SCRDPSPTAKFCTLRYEFKPASI 48


>12_01_0059 +
           494876-494924,496060-496211,496344-496531,496971-497027,
           497123-497282,497389-497457,497712-497837,497972-498091
          Length = 306

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 304 DRQSKFEKR*IYGGGLPRKPQPHRSRQRNGKRKTI 408
           +R++K   R ++  G P KP   R  QRN ++  I
Sbjct: 269 EREAKAANRGLWASGNPEKPWDWRRDQRNARQDAI 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,699
Number of Sequences: 37544
Number of extensions: 347194
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)