Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K05
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      29   3.1  
SB_54571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37067| Best HMM Match : Mgm101p (HMM E-Value=2.94273e-44)           29   4.1  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       28   5.5  
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)              27   9.6  
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)                     27   9.6  
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)                     27   9.6  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  27   9.6  
SB_22133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 492  LHVTFLNSPLQPPNRNDVFSTH 427
            L +TF    LQ  NRNDVF T+
Sbjct: 1321 LKITFAGETLQDTNRNDVFKTY 1342


>SB_54571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 123 YDSDI*RWQNELFHCIFVNKARANYLRV 40
           YD+ + R Q+ LFH +++   R NY+++
Sbjct: 10  YDTQVLRVQSNLFHSMWLRSWRQNYVKI 37


>SB_37067| Best HMM Match : Mgm101p (HMM E-Value=2.94273e-44)
          Length = 319

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 123 YDSDI*RWQNELFHCIFVNKARANYLRV 40
           YD+ + R Q+ LFH +++   R NY+++
Sbjct: 226 YDTQVLRVQSNLFHSMWLRSWRQNYVKI 253


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 332 HRFSNLLCRSDSESRTDCSLCRPAMDYRNRSS 237
           H  S +L R+D ES+ D S C+     R +S+
Sbjct: 865 HDASPILIRTDQESKLDSSCCQSCSSLRQKSA 896


>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
          Length = 569

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 362 RNHIVLGNETGNGRQFDVLDAKCVEKTSFLL 454
           RN+I+ GNE    R  DV+ A  +E+   LL
Sbjct: 207 RNNIIFGNEFNEARYNDVIKACALERDITLL 237


>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 365 NHIVLGNETGNGRQFDVLDAKCVEKTS 445
           N + +G E+G  + FD+ +A+CV K S
Sbjct: 71  NLLCVGYESGEIKSFDIENAECVHKCS 97


>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
          Length = 752

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 365 NHIVLGNETGNGRQFDVLDAKCVEKTS 445
           N + +G E+G  + FD+ +A+CV K S
Sbjct: 71  NLLCVGYESGEIKSFDIENAECVHKCS 97


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 183 IKKLIKRNLNEYLNKDISKIYDSDI*RWQNELFHCIFVNKARANYL 46
           I  L++R L   L  D++   D DI  W++  FHC+ + K   +YL
Sbjct: 96  ILHLMRRILKIRLPSDLT--CDGDI-PWKSVYFHCLMITKHIVDYL 138


>SB_22133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 513 TVVHG*VLHVTFLNSPLQPPNRNDVFSTH 427
           TVV+  V+ +TF    LQ  NR DVF T+
Sbjct: 6   TVVNN-VVKITFAGETLQDTNRYDVFKTY 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,409,387
Number of Sequences: 59808
Number of extensions: 397374
Number of successful extensions: 1270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)