Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K05
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 31 0.91
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z49074-2|CAE48829.1| 807|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z49074-1|CAA88893.3| 771|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z49073-9|CAE48845.1| 807|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z49073-8|CAA88892.3| 771|Caenorhabditis elegans Hypothetical pr... 30 1.6
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 30 1.6
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 30 1.6
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine r... 28 4.8
Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear recep... 28 6.4
AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear horm... 28 6.4
L14429-4|AAA28217.2| 171|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 27 8.4
AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical ... 27 8.4
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 8.4
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 412 VKLSSVSRFVAENDVVAASGAGHHHKFTASQTYSV 308
V+++ +S+ V ND + A AGH H + S Y+V
Sbjct: 154 VQMNQISQGVTTNDRIKARRAGHAHSHSGSTDYNV 188
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 412 VKLSSVSRFVAENDVVAASGAGHHHKFTASQTYSV 308
V+++ +S+ V ND + A AGH H + S Y+V
Sbjct: 262 VQMNQISQGVTTNDRIKARRAGHAHSHSGSTDYNV 296
>Z49074-2|CAE48829.1| 807|Caenorhabditis elegans Hypothetical
protein ZK970.1b protein.
Length = 807
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +2
Query: 428 CVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKSCH--LNSKLYRI---GYEI-----Q 577
C F GGW + +V K W T+Y+T+++ H + +++I Y + +
Sbjct: 127 CDNFYQFACGGWINQ--SVNLKYDSWNTLYETQRTAHDQIVQAMHKINDGSYPLPTNAGE 184
Query: 578 KAFYSLYEACXDLSEMK 628
+A +YE C D ++
Sbjct: 185 RAAAKMYEQCMDTDTLE 201
>Z49074-1|CAA88893.3| 771|Caenorhabditis elegans Hypothetical
protein ZK970.1a protein.
Length = 771
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +2
Query: 428 CVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKSCH--LNSKLYRI---GYEI-----Q 577
C F GGW + +V K W T+Y+T+++ H + +++I Y + +
Sbjct: 91 CDNFYQFACGGWINQ--SVNLKYDSWNTLYETQRTAHDQIVQAMHKINDGSYPLPTNAGE 148
Query: 578 KAFYSLYEACXDLSEMK 628
+A +YE C D ++
Sbjct: 149 RAAAKMYEQCMDTDTLE 165
>Z49073-9|CAE48845.1| 807|Caenorhabditis elegans Hypothetical
protein ZK970.1b protein.
Length = 807
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +2
Query: 428 CVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKSCH--LNSKLYRI---GYEI-----Q 577
C F GGW + +V K W T+Y+T+++ H + +++I Y + +
Sbjct: 127 CDNFYQFACGGWINQ--SVNLKYDSWNTLYETQRTAHDQIVQAMHKINDGSYPLPTNAGE 184
Query: 578 KAFYSLYEACXDLSEMK 628
+A +YE C D ++
Sbjct: 185 RAAAKMYEQCMDTDTLE 201
>Z49073-8|CAA88892.3| 771|Caenorhabditis elegans Hypothetical
protein ZK970.1a protein.
Length = 771
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Frame = +2
Query: 428 CVEKTSFLLGGWRGEFRNVTCKTQPWTTVYDTKKSCH--LNSKLYRI---GYEI-----Q 577
C F GGW + +V K W T+Y+T+++ H + +++I Y + +
Sbjct: 91 CDNFYQFACGGWINQ--SVNLKYDSWNTLYETQRTAHDQIVQAMHKINDGSYPLPTNAGE 148
Query: 578 KAFYSLYEACXDLSEMK 628
+A +YE C D ++
Sbjct: 149 RAAAKMYEQCMDTDTLE 165
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 298 RNQELIVLYVDRRWITEIGVQ*QDATSIYVV 206
R + +++Y DRRWIT + QD ++Y V
Sbjct: 129 REERDVLVYGDRRWITNLHYAFQDEKNLYFV 159
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 27 ISCLLHVGNSRVLCLQKYSETVRFATARCHYHIF 128
I CLL G S L +Y +T+ T RC YHIF
Sbjct: 351 IPCLLMDGESS---LGEYGKTLDVMTIRCDYHIF 381
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 230 LSLNSDFGNPSPVYIKNNQFLIPNLTDRVSLRSGEFMVVACPGSRNHI 373
++L F NPSPVY KN+ + L + S F RNH+
Sbjct: 1138 VNLTETFSNPSPVYDKNSGHMESILMGLIGANSMAFDRHIVTAVRNHL 1185
>Z75549-7|CAD60423.1| 306|Caenorhabditis elegans Hypothetical
protein T19C4.8 protein.
Length = 306
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +2
Query: 116 LSYIFEMSLFRYSFKFLFMSFLMAYLFLNSYDVDAGCVLSLNSDFGNPSPVYIKNNQFLI 295
+SY+ ++ F + K L +F + ++ V G +L+L K +
Sbjct: 195 ISYL-KIRTFPFKPKNLEYNFFIVTALASAIQV-LGTILTLAMKSAASDSTTYKVTNTAL 252
Query: 296 PNLTDRVSLRSGEFMVVACPGSRNHI 373
P ++D +SL +++ C G R H+
Sbjct: 253 PYVSDALSLIQPTLLIIFCKGIRKHV 278
>AF024503-12|AAG24092.2| 329|Caenorhabditis elegans Serpentine
receptor, class u protein25 protein.
Length = 329
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -2
Query: 435 STHLASKTSNCLPFPVSLPRTMWLRLPGQATTINSPLLKLTLSVRFGIKN*L-FFM*TGD 259
+T+ + + PF V+L R + P Q IN +LK+++ + F FFM TG
Sbjct: 116 TTYYLNYSLMLFPFLVALLRLNLIVFPSQHRKINETILKISIPIVFIYPFFFTFFMFTGS 175
Query: 258 G 256
G
Sbjct: 176 G 176
>Z66565-3|CAA91479.1| 177|Caenorhabditis elegans Hypothetical
protein T04F8.3 protein.
Length = 177
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 137 SLFRYSFKFLFMSFLMAYLFLNSY 208
S+ Y+F FL SFL +Y + NS+
Sbjct: 135 SILEYNFFFLQFSFLSSYFYSNSF 158
>AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear receptor
NHR-57 protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 146 RYSFKFLFMSFLMAYLFLNSYDVDAGCVLSLNSDF 250
++ FK+ F+SFL+ + SY ++ N DF
Sbjct: 196 KHVFKYFFVSFLILEMGYRSYQEGTDAIVLANGDF 230
>AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 57 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 146 RYSFKFLFMSFLMAYLFLNSYDVDAGCVLSLNSDF 250
++ FK+ F+SFL+ + SY ++ N DF
Sbjct: 192 KHVFKYFFVSFLILEMGYRSYQEGTDAIVLANGDF 226
>L14429-4|AAA28217.2| 171|Caenorhabditis elegans Hypothetical
protein ZK652.8 protein.
Length = 171
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 470 EFRNVTCKTQPWTT-VYDTK-KSCHLNSKLYRIGYEIQKAFYSLYEACXDLSEMK 628
E NV +T+ W ++D K ++ ++ R+G E++K + AC D+ M+
Sbjct: 100 EIENVETQTRIWLNELHDVHDKRVDIDCQMIRLGSEVKKNETYVQLACIDIERME 154
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 39 LHVGNSRVLCLQKYSETVRFATARCHY 119
L N +LCL+K E F RCHY
Sbjct: 785 LENNNRCLLCLKKKEELHEFQKKRCHY 811
>AC006608-5|ABC71834.1| 311|Caenorhabditis elegans Hypothetical
protein C15F1.5b protein.
Length = 311
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 338 MVVACPGSRNHIVLGNETGNGRQFDVLDAKCVEKTS 445
+V+ C G+R V G + NGR F L KCV K S
Sbjct: 62 IVIPCCGARMCDVCGPKWTNGRDFCEL-GKCVNKES 96
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 338 MVVACPGSRNHIVLGNETGNGRQFDVLDAKCVEKTS 445
+V+ C G+R V G + NGR F L KCV K S
Sbjct: 132 IVIPCCGARMCDVCGPKWTNGRDFCEL-GKCVNKES 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,901
Number of Sequences: 27780
Number of extensions: 309121
Number of successful extensions: 843
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -