Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K05
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi...    31   0.48 
At5g45113.1 68418.m05537 mitochondrial transcription termination...    30   1.5  
At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam ...    29   1.9  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    29   2.6  
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    28   5.9  
At3g61770.1 68416.m06929 expressed protein contains Pfam domain,...    27   7.8  

>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
           to L-aspartate oxidase, Escherichia coli [SP|P10902];
           contains Pfam profiles PF00890 FAD binding domain,
           PF02910 Fumarate reductase/succinate dehydrogenase
           flavoprotein C-terminal domain
          Length = 651

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 433 HAFSV*NVKLSSVSRFVAENDVVAASGAGHHHKFTASQTYSVG 305
           H     N+K + V RF+++  ++A+ GAGH +  T +   + G
Sbjct: 249 HGVDTLNIKTNEVVRFISKVTLLASGGAGHIYPSTTNPLVATG 291


>At5g45113.1 68418.m05537 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 414

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 269 YIKNNQFLIPNLT-DRVSLRSGEFMVVACPGSRNHIVLGNETGNGR-QFDVLDAKCVEKT 442
           +I ++  L+P    +R+ +R  E   +          + ++T  GR + D LD++  EKT
Sbjct: 203 HICSSSLLVPRAVWNRLKIRRDELCQIIKEEPLRLFSIASKTNKGRIELDSLDSRNAEKT 262

Query: 443 SFLL 454
           +FLL
Sbjct: 263 TFLL 266


>At3g25430.1 68416.m03162 CAF1 family ribonuclease contains Pfam
           domain, PF04857: CAF1 family ribonuclease
          Length = 618

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -1

Query: 505 PRLSFARDVSKLTPPAS**---E*CFFHAFSV*NVKLSSVSRFVAENDVVAASGAGHHHK 335
           P  SF+   S+LT  A        C +   S  +    S S+F++EN ++A S       
Sbjct: 125 PSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSSP 184

Query: 334 FTASQTYSVGQIRNQ 290
            T + T  VG+IR++
Sbjct: 185 ATVADTVFVGRIRSR 199


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 367 VAASGAGHHHKFTASQTYSVGQ 302
           VAASG  HHH++     Y VG+
Sbjct: 18  VAASGHNHHHRYKYISNYGVGR 39


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 280 VLYVDRRWITEIGVQ*QDATSIYVVTVQKQISH*KTHKEKF 158
           VLY   +W+ + G+   D  S+YV  ++   +H K  K +F
Sbjct: 172 VLYARNKWLVDGGIVLPDKASLYVTAIED--AHYKDDKVEF 210


>At3g61770.1 68416.m06929 expressed protein contains Pfam domain,
           PF02681: Uncharacterized BCR, COG1963
          Length = 284

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 109 LAVAKRTVSLYFCKQSTRELPTCRRQL 29
           L  +  T+SL+ CK S+   P C R++
Sbjct: 35  LEASNNTLSLFCCKSSSNPKPDCNRRI 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,662
Number of Sequences: 28952
Number of extensions: 281016
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)