Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K04
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 60 1e-09
05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381... 48 5e-06
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 31 0.79
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 29 2.4
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 29 2.4
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 28 5.6
09_03_0098 - 12341741-12341769,12342530-12342927,12343843-123438... 28 5.6
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 5.6
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 28 5.6
03_06_0004 + 30936670-30936726,30936858-30936905,30937045-309370... 28 5.6
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 28 7.4
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 28 7.4
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983... 28 7.4
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490... 27 9.7
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/96 (35%), Positives = 53/96 (55%)
Frame = +1
Query: 361 QRLTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDF 540
Q L W PP TVL++KK+ D +++ ++ +L H + M V VE V D + A +
Sbjct: 1415 QMLMWKSPPKTVLLLKKLGD-ELMEEAKEVASFLHHQEKMNVLVEPDVHD--IFARIPGY 1471
Query: 541 TSVKERLMTFRASTDDLTDKIDFIICLGGDGTLXHA 648
V+ + T DL +++DF+ CLGGDG + HA
Sbjct: 1472 GFVQT---FYTQDTSDLHERVDFVACLGGDGVILHA 1504
>05_04_0161 +
18635635-18635788,18637117-18637295,18638032-18638145,
18638274-18638368,18638604-18638710,18639455-18639528,
18641170-18641400,18641892-18642197
Length = 419
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/91 (32%), Positives = 45/91 (49%)
Frame = +1
Query: 367 LTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTS 546
L W PP TVL + K + + A ++V WL ++ +FVE V + L+ E F
Sbjct: 152 LKWESPPQTVLFVTKPNSNSVHALCAEMVRWLKEHNNINIFVEPRVSKE-LVTEDSYFNF 210
Query: 547 VKERLMTFRASTDDLTDKIDFIICLGGDGTL 639
++ T L K+D I+ LGGDGT+
Sbjct: 211 IQTWDNDEEMKT--LHTKVDLIVTLGGDGTV 239
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 367 LTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTL 519
L W P TVL I K + + ++V WL K + V VE V + L
Sbjct: 252 LKWESSPQTVLFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELL 302
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 535 PHTPQGVCHPKLPPRRTPPC 476
PH +C P+LPP R+P C
Sbjct: 9 PHLRLDLCSPRLPPLRSPGC 28
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 565 SSDVPSPT*SPHTPQGVCHPKLPPRRTP 482
SS PSP SP P P LPPRR+P
Sbjct: 26 SSSSPSP--SPSPPSSSRKPPLPPRRSP 51
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 535 PHTPQGVCHPKLPPR-RTPPCFCHERASVLAERRVPVSGRR 416
P+ C LPP + P C C +R ++A R + GRR
Sbjct: 10 PNWRSDPCVYLLPPWCQRPLCLCGDRCQLMASRNPDIRGRR 50
>09_03_0098 -
12341741-12341769,12342530-12342927,12343843-12343889,
12344916-12345244,12345523-12345601
Length = 293
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 629 SPPRHMMKSILSVRSSVLALKVIRRSFTDVKSPYSARSV 513
SPP + +S+ +R A RRS T K P S+R V
Sbjct: 247 SPPNSLARSLAGLRHRRSAKSGARRSTTTAKGPTSSRLV 285
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 230 TLVRCVF-LRGPGDPPGEFS 174
TL C+F LRGP PPG+++
Sbjct: 4781 TLCNCIFPLRGPSVPPGQYT 4800
>07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 405 DDQHGEGRLVPGQPLRRRILDLHDHGGIFHNPAAWSKLLYWGRRVQGSSSPK 250
D G + V Q R+ L D GG H+ ++ L+WG +Q SS K
Sbjct: 1161 DVAKGATKTVTSQQPRQETLVGSDQGGAKHDLQDDAEELFWGSPIQVESSSK 1212
>03_06_0004 +
30936670-30936726,30936858-30936905,30937045-30937080,
30937184-30937258,30937568-30937692,30937770-30937779,
30938125-30938296,30938547-30938665,30938868-30938978,
30939053-30939197,30939340-30939472,30939545-30939620,
30940141-30940206,30940308-30940415,30940750-30940857,
30940948-30941145,30941343-30941591
Length = 611
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -2
Query: 567 SHQTFLHRRKVPILRKECVIQNCRLDEH 484
SHQ FLHR KV I+ +E V+ NC ++E+
Sbjct: 420 SHQ-FLHR-KVSIVSQEPVLFNCSIEEN 445
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 337 MQIQDPASQRLTWYKPPLTVLVIKKVHDA--QILAPFVQL---VHWLVHDKSMVVFVEAA 501
+QI L W K PL + +K + + +L +Q+ V L H + MVV+V+
Sbjct: 578 LQISYNGDANLMW-KLPLELKKMKMLREVGFSVLGNHLQVAQDVGELDHLQEMVVYVDDI 636
Query: 502 VLDDTLLAEYGDFTS 546
DD +L E+ + S
Sbjct: 637 TFDDNVLTEFANSLS 651
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 574 ASTDDLTDKIDFIICLGGDG 633
AST DL+ D IIC+GGDG
Sbjct: 147 ASTVDLSTCPDGIICVGGDG 166
>07_03_0064 +
12995669-12995904,12996299-12996533,12998223-12998384,
12999446-12999566,13000095-13001608
Length = 755
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Frame = +3
Query: 324 FRHGHANPGSGVAEA------DLVQASPHRAGHQESSRRPDT--GTLRSASTLARS*QKH 479
F G G G+ EA DLV++ R + SRRPDT T R L R +H
Sbjct: 498 FDRGVVQDGDGLREAFIRDHRDLVESGDKRLDDWDLSRRPDTVLATFRFTDELLRKLGRH 557
>03_03_0135 +
14748712-14748718,14748807-14748873,14748962-14749076,
14749179-14749382,14749614-14749742,14749822-14749989,
14750648-14750808,14751490-14751580,14752277-14752436,
14752782-14752815,14753122-14753211,14754780-14754893,
14755000-14755123,14755652-14755762,14756378-14756478,
14756571-14756703
Length = 602
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 294 LLYWGRRVQGSSSPKCLKLVYNFS*MCFSEGSWRS 190
L++W + +G+SS K +++ F E +W++
Sbjct: 55 LIFWQSKAEGTSSQKLYFMIFERGPRAFVEAAWQT 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,215
Number of Sequences: 37544
Number of extensions: 469071
Number of successful extensions: 1330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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