Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K04
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  29   2.5  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 29   3.3  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                29   4.3  
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  

>SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 303

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 559 DVPSPT*SPHTPQGVCHPKLPPRRTPPC 476
           D+P     PH P   C P  PP+   PC
Sbjct: 102 DIPCTPDKPHKPDKPCTPDKPPKPDIPC 129


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 320 KIPPWSCKSRIRRRRG*PGTSLPSPCWSSRKFT 418
           K+PP +C +R++  R  P T     C+SS +FT
Sbjct: 586 KLPPSTCVARVQVTREAPITDGTLSCFSSERFT 618


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +3

Query: 426 DTGTLRSASTLARS*QKHGGVRRGGSFG*HTPCGVWGLYVGEGTSDDFQS 575
           DT TL   +TL     K+GG+R  GS G     G+ G  VG   S++ QS
Sbjct: 235 DTATL---TTLEGQLHKYGGIRLWGSLG----WGIGGFSVGAAVSNNHQS 277


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 559 DVPSPT*SPHTPQGVCHPKLPPRRTPP 479
           + P P  SPH P    HP +PP   PP
Sbjct: 210 ETPLPPGSPHIPPAPLHPHIPP--APP 234


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +1

Query: 304 CGRIMKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMV 483
           C +IM+ +    Q+ D    R+T   P LTVLV + V  A+++A    L++   H  S V
Sbjct: 169 CDQIMEVAEYRAQLYDYLKNRMTAIAPNLTVLVGELV-GARLIAHAGSLLNLAKHPSSTV 227

Query: 484 VFVEA 498
             + A
Sbjct: 228 QILGA 232


>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 293 SLDHAAGL*KIPPWSCKSRIRRR 361
           SL+ AAG  ++PP +C +R+R++
Sbjct: 18  SLESAAGSKRLPPRACSNRVRKK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,754,943
Number of Sequences: 59808
Number of extensions: 481035
Number of successful extensions: 1194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)