Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K04
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   7.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   7.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   7.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 520 GVCHPKLPPRRTPPCFCHER 461
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 520 GVCHPKLPPRRTPPCFCHER 461
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 320 FIILPHGPNCCIGD 279
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 320 FIILPHGPNCCIGD 279
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 320 FIILPHGPNCCIGD 279
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,362
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)