Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K04
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21070.1 68416.m02663 ATP-NAD kinase family protein contains ... 58 5e-09
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ... 55 4e-08
At3g21070.2 68416.m02664 ATP-NAD kinase family protein contains ... 54 8e-08
At4g35930.1 68417.m05111 expressed protein 30 1.5
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 29 2.7
At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH... 28 4.7
At1g78590.1 68414.m09159 ATP-NAD kinase family protein contains ... 28 4.7
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 6.1
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 6.1
At5g51140.1 68418.m06341 pseudouridine synthase family protein l... 27 8.1
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 27 8.1
At3g04260.1 68416.m00450 SAP domain-containing protein contains ... 27 8.1
>At3g21070.1 68416.m02663 ATP-NAD kinase family protein contains
Pfam domain, PF01513: ATP-NAD kinase
Length = 530
Score = 58.0 bits (134), Expect = 5e-09
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Frame = +1
Query: 367 LTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTS 546
LTW P TVL+I K + + V +V WL K + ++VE V ++ LL+E F
Sbjct: 207 LTWESDPQTVLIITKPNSTSVRVLSVDMVRWLRTQKGLNIYVEPRVKEE-LLSESSSFNF 265
Query: 547 VK--ERLMTFRASTDD--LTDKIDFIICLGGDGTLXHA 648
V+ E +M + A + L K+D +I LGGDGT+ A
Sbjct: 266 VQTWEDVMIYDADKEISLLHTKVDLLITLGGDGTVLWA 303
>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
similarity to NAD kinase [Homo sapiens]
gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
ATP-NAD kinase
Length = 985
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/96 (34%), Positives = 51/96 (53%)
Frame = +1
Query: 361 QRLTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDF 540
Q L W P TVL++KK+ +++ + +L H ++M V VE V D + A F
Sbjct: 669 QMLLWKTTPKTVLLLKKLGQ-ELMEEAKEAASFLYHQENMNVLVEPEVHD--VFARIPGF 725
Query: 541 TSVKERLMTFRASTDDLTDKIDFIICLGGDGTLXHA 648
V+ + T DL +++DF+ CLGGDG + HA
Sbjct: 726 GFVQT---FYIQDTSDLHERVDFVACLGGDGVILHA 758
>At3g21070.2 68416.m02664 ATP-NAD kinase family protein contains
Pfam domain, PF01513: ATP-NAD kinase
Length = 524
Score = 54.0 bits (124), Expect = 8e-08
Identities = 34/94 (36%), Positives = 48/94 (51%)
Frame = +1
Query: 367 LTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFTS 546
LTW P TVL+I K + + V +V WL K + ++VE V ++ LL+E F
Sbjct: 207 LTWESDPQTVLIITKPNSTSVRVLSVDMVRWLRTQKGLNIYVEPRVKEE-LLSESSSFNF 265
Query: 547 VKERLMTFRASTDDLTDKIDFIICLGGDGTLXHA 648
V+ S L K+D +I LGGDGT+ A
Sbjct: 266 VQTWEDDKEISL--LHTKVDLLITLGGDGTVLWA 297
>At4g35930.1 68417.m05111 expressed protein
Length = 321
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 553 PSPT*SPHTPQGVCHPKLPPRRTPPCFCHERASVLAERRVPVSGR 419
P+ SPHTP+ H PP RT + +VL + + P R
Sbjct: 237 PTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSR 281
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 275 RRPQYNSLDHAAGL*KIPPWSCKSRIRRRRG*PGTSLPSPCW 400
+ Y++L++ L +P W K+ R+RRG G +P C+
Sbjct: 664 KETSYDALNNTPCL--LPSWISKAAARQRRGRAGRVMPGECY 703
>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
thaliana]
Length = 292
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 594 SEIVGASSESHQTFLHRRKVPILRKECVIQNCRLDEHHHAFVMNEPVY*LNEG 436
S ++ A+ H H VP+ R + N +L++ HH + N+P N G
Sbjct: 115 SVMMAANDHYHPLLHHHHGVPMQRPANSV-NVKLNQDHHLYHHNKPYPSFNNG 166
>At1g78590.1 68414.m09159 ATP-NAD kinase family protein contains
Pfam domain, PF01513: ATP-NAD kinase
Length = 317
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 601 IDFIICLGGDGTLXHA 648
+D +I +GGDGTL HA
Sbjct: 76 VDMVITVGGDGTLLHA 91
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 562 SDVPSPT*SPHTPQGVCHPKLPPRRTPPCFC 470
S P+P+ HTP P TPPC C
Sbjct: 77 SHTPTPSTPSHTPTPHTPSHTPTPHTPPCNC 107
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 562 SDVPSPT*SPHTPQGVCHPKLPPRRTPPCFC 470
S P+P+ HTP P TPPC C
Sbjct: 77 SHTPTPSTPSHTPTPHTPSHTPTPHTPPCNC 107
>At5g51140.1 68418.m06341 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 395
Score = 27.5 bits (58), Expect = 8.1
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = -2
Query: 609 EVDLISEIVGASSESHQTFLHRRKVPILRKECVIQNCRLDEHHHAFVMNEPVY*LNEGCQ 430
E+ +S IV SS+ FLHR + P++ + VI + D + PV+ + +
Sbjct: 106 EIVPVSYIV-KSSQKITHFLHRHEPPVMIDDVVILHQEPDVVTVCKPASVPVHPCGQ-YR 163
Query: 429 YLGVVNFLDDQHGEGRLVPGQPLRRRILDL 340
+V LD +H G L P L R + L
Sbjct: 164 KNTIVGILDAEHDLGTLFPIHRLDRLVSGL 193
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 352 PASQRLTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAE 528
P+S L + PL++ +++ D + F ++ H +S+V EA+ D++L++
Sbjct: 92 PSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSK 150
>At3g04260.1 68416.m00450 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 913
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 621 QAYDEVDLISEIVGASSESHQTFLHRRKVPILRKECVIQNCRLDE 487
++YD V ++E++G E H+ K L EC + C + E
Sbjct: 299 ESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKE 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,115
Number of Sequences: 28952
Number of extensions: 335522
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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