Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K03
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.91 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   6.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   6.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 345 MERMLQPCGPPPEKPED 395
           ME  L PC  P  KP+D
Sbjct: 126 METTLTPCASPNRKPDD 142


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -3

Query: 709 RLNGNQN*FL*DKTI*NKFVYKNKIVKHLTIEPILNYKLYLLFVVFI 569
           RLN N      D+ + N+  ++  ++++++++  +   LY+L  VF+
Sbjct: 109 RLNNNLQYI--DEVLKNRDSHETNLLRNVSVQFFVYVILYILATVFL 153


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = -3

Query: 709 RLNGNQN*FL*DKTI*NKFVYKNKIVKHLTIEPILNYKLYLLFVVFI 569
           RLN N      D+ + N+  ++  ++++++++  +   LY+L  VF+
Sbjct: 109 RLNNNLQYI--DEVLKNRDSHETNLLRNVSVQFFVYVILYILATVFL 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,439
Number of Sequences: 336
Number of extensions: 3599
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)