Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K03
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b, sub...   164   4e-40
AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b, sub...   164   4e-40
U87408-1|AAB47568.1|  453|Homo sapiens unknown protein.                32   2.1  
BC103831-1|AAI03832.1|  887|Homo sapiens Bardet-Biedl syndrome 9...    32   2.1  
AF095771-1|AAD25981.1|  802|Homo sapiens PTH-responsive osteosar...    32   2.1  

>BC000198-1|AAH00198.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  164 bits (398), Expect = 4e-40
 Identities = 71/85 (83%), Positives = 79/85 (92%)
 Frame = +3

Query: 141 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 320
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 321 KARVKFNLMERMLQPCGPPPEKPED 395
           KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61  KARVRFNLMEKMLQPCGPPADKPEE 85


>AL031390-2|CAI19755.1|   86|Homo sapiens splicing factor 3b,
           subunit 5, 10kDa protein.
          Length = 86

 Score =  164 bits (398), Expect = 4e-40
 Identities = 71/85 (83%), Positives = 79/85 (92%)
 Frame = +3

Query: 141 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 320
           M +RY IHSQLEHLQSKYIGTGHADTTK+EWL+NQHRDS CSYMGH DLL+YFAI ENES
Sbjct: 1   MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES 60

Query: 321 KARVKFNLMERMLQPCGPPPEKPED 395
           KARV+FNLME+MLQPCGPP +KPE+
Sbjct: 61  KARVRFNLMEKMLQPCGPPADKPEE 85


>U87408-1|AAB47568.1|  453|Homo sapiens unknown protein.
          Length = 453

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 135 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 311
           +K  +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF +++
Sbjct: 159 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 216

Query: 312 NESKARVKFNLMERML 359
           +  + R+    +E +L
Sbjct: 217 HHFELRINGEKLEELL 232


>BC103831-1|AAI03832.1|  887|Homo sapiens Bardet-Biedl syndrome 9
           protein.
          Length = 887

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 135 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 311
           +K  +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF +++
Sbjct: 593 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 650

Query: 312 NESKARVKFNLMERML 359
           +  + R+    +E +L
Sbjct: 651 HHFELRINGEKLEELL 666


>AF095771-1|AAD25981.1|  802|Homo sapiens PTH-responsive
           osteosarcoma B1 protein protein.
          Length = 802

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 135 NKMGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQH-RDSCCSYMGHPDLLSYFAIVE 311
           +K  +RY I S  E  +  ++ T        E+   Q  +D  CS+ G   L  YF +++
Sbjct: 508 SKTSQRYRIQS--EQFEDLWLITNELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELID 565

Query: 312 NESKARVKFNLMERML 359
           +  + R+    +E +L
Sbjct: 566 HHFELRINGEKLEELL 581


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,487,947
Number of Sequences: 237096
Number of extensions: 1768617
Number of successful extensions: 6352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6352
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)