Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K01
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)                30   1.0  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   1.8  
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                27   7.1  
SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    27   9.4  

>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
          Length = 751

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 153 FVARNRNILHGLVLRLRSYKY*SLKRYVQRVTFIIG-GRLIFWFRYFVLVAMGR 311
           F   NR     ++  L +  +  +  Y QR+T +   G +IF+F Y V+V +GR
Sbjct: 587 FHLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGFIIFYFAYVVVVIVGR 640


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 380 SIEEWCYIIHNLNYTLH*YHT*IPTHSNKNKIPK 279
           +I E+ +I+H LNY LH   T I + S   KI K
Sbjct: 424 AIGEFAFILHLLNYKLHLMRTAIFSSSKNEKIVK 457


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 191 SSFTKLQVLK---PQEICSKSYFYHWWPPY 271
           +SF  +QVLK    + IC+ + FYH W  Y
Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKY 378


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 227 EICSKSYF-YHWWPPYFLVSVFCSC 298
           E+CS  Y+ Y+  PPY     +C+C
Sbjct: 610 EMCSGGYYVYYLRPPYVCSMAYCAC 634


>SB_52215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 742

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 209 VTS*TKNQAVKNIPIPSNKKVRCGKTAGFIGDVYRIID--SISRLIFMAIL 63
           ++S  K    KN+ I  N   + GK   F G+VY + D  +I+  +F+ ++
Sbjct: 235 ISSPHKTSPTKNVEISINVSGKKGKRKKFQGEVYSLKDQCTIAEQVFVILM 285


>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 308 THSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKT 132
           T   K  IP P +   T   + +  ++ +     TS   N+  K   IP++++ R  KT
Sbjct: 196 TEEEKGPIPVPPSNRPTMSPATTNQLATQGDNFTTSPLANRPTKMTNIPTDQEERINKT 254


>SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 197 FTKLQVLKPQEICSKSYFYHWWPPYFLVSV-FCSCCYG*GFMCDI 328
           F +   + P+  C   Y   WWP Y  V + F  C +  GF+  I
Sbjct: 154 FAESLTILPRGSCQNDYA--WWPNYTTVQLTFVLCAFTPGFVIPI 196


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 194 KNQAVKNIPIPSNKKVRCGKTAGFIGDVY 108
           + Q   N P P+ KKV  G  A  + DVY
Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,175
Number of Sequences: 59808
Number of extensions: 236864
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)