Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K01
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29735.1 68417.m04234 expressed protein contains Pfam domain ...    37   0.009
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    28   4.4  
At3g50300.1 68416.m05501 transferase family protein similar to a...    27   5.8  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   7.7  
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    27   7.7  

>At4g29735.1 68417.m04234 expressed protein contains Pfam domain
           PF05251: Uncharacterised protein family (UPF0197)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 115 SPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 294
           SPI  A++P              A FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 295 XXXWVGIYV 321
                G+YV
Sbjct: 68  LLLASGVYV 76


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 311 PTHSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKK 150
           P +SN NK  KPEN+ AT +K++ +   +     + S T+     +   PS+++
Sbjct: 441 PENSNNNK--KPENECATTNKNDVMGEMIRTHRRLLSETREIDEASCNFPSSRR 492


>At3g50300.1 68416.m05501 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 305 HSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKTAG 126
           H  K K+   + KA  ND+  S +I + +L  V +      V++  +   ++ RCG  A 
Sbjct: 234 HFTKEKLS--DLKAKANDEIGSSDIKISSLQAVLAHLWRSIVRHSGLNQEEESRCGVAAD 291

Query: 125 F 123
           F
Sbjct: 292 F 292


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 171  SYSEQQKG*MWKNCRVYWRRVP 106
            SY  Q +  +WK  + YWR VP
Sbjct: 1131 SYLSQFQACLWKQHKSYWRNVP 1152


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 173 YSSRPGSSFTKLQVLKPQEICSKSYF-YHWWPPYFLVSVFCS 295
           +S  PG+    +++++  E C  SYF YHW     ++S   S
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQILS 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,789
Number of Sequences: 28952
Number of extensions: 168556
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)