Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J24
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.40 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.69 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.69 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   0.69 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.69 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.69 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.69 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   0.69 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.69 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.2  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   2.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   2.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.5  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   8.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 315 VFGQSGAGNNW-AKGHYTEGAELVDSVLDVVRKEAESCDCLQGIPT 449
           +  + G  N + A+  Y  G+E   S++ +   +  +C C  G PT
Sbjct: 839 ILAEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPT 884


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  + S   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTTSQNLSSPASSTSSTSS 178


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 35  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 67



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 104 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 134


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R AS  +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 84   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 206
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 384 DSVLDVVRKEAESCDCLQGIPTDTLARRRHRFRY 485
           D V    RK AE C  LQG   +   +R+   R+
Sbjct: 233 DVVASNSRKTAEMCYKLQGFYPEEAPQRKELLRF 266


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 469 RRRASVSVGXPWRQSHDSASFRTTSKTESTSSA 371
           +R A   +  P  Q+H SAS +    T ST  A
Sbjct: 79  QRLAPTHLQSPNTQTHPSASCKYADSTSSTGVA 111



 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 457 SVSVGXPWRQSHDSASFRTTSKTESTSSAPS 365
           SVS   P + +  +AS   +S   STSS  S
Sbjct: 148 SVSTSPPGKPATSTASQNLSSPASSTSSTSS 178


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 426 DCLQGIPTDTLARRRHRFRY 485
           DC      D L RR H  RY
Sbjct: 371 DCESPPAADELLRRFHEIRY 390


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 172 CKSESPW*APVGSMPC 125
           C +E PW    G  PC
Sbjct: 351 CVNERPWSLYCGEPPC 366


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 18  IYSSHK*NKMREIVHIQAGQCGNQIGAKFWEI 113
           I +  + N+++  V I    C N   A+F+E+
Sbjct: 283 IEAKRRDNEIKMFVKIVDASCRNFTAARFFEL 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,479
Number of Sequences: 336
Number of extensions: 2392
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)