Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J23
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70682-9|CAA94587.2|  460|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z70680-9|CAA94576.2|  460|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   9.9  

>Z70682-9|CAA94587.2|  460|Caenorhabditis elegans Hypothetical
           protein C25G4.1 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 25  RQHSKMNIFYYITVLICACLAYVSALPSAIAGAEDLQPAESRWN 156
           R H+  N+F   + ++   L  V A  SA+  ++DL P  S W+
Sbjct: 262 RVHNSHNLFKIFSNMLFPSLFLVFA--SAVLASDDLNPCNSSWH 303


>Z70680-9|CAA94576.2|  460|Caenorhabditis elegans Hypothetical
           protein C25G4.1 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 25  RQHSKMNIFYYITVLICACLAYVSALPSAIAGAEDLQPAESRWN 156
           R H+  N+F   + ++   L  V A  SA+  ++DL P  S W+
Sbjct: 262 RVHNSHNLFKIFSNMLFPSLFLVFA--SAVLASDDLNPCNSSWH 303


>AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical
           protein Y9D1A.1 protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 114 DGRRESGDICEARTDQNSD 58
           DG RESG+IC+   D   D
Sbjct: 383 DGERESGNICDKSDDDEQD 401


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 135  LEVFSSCDGRRESGDICEARTDQNSDIVENVHLGVLSEQC 16
            ++V + CDGR + GD     +D+++   E  H GV +++C
Sbjct: 1225 IDVSARCDGRDDCGD----GSDEDTCGAECHHFGVCAQKC 1260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,952,029
Number of Sequences: 27780
Number of extensions: 159419
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)