Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J23
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   6.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   6.8  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  LQDEHFLLYHCFD 71
           L++ H  L+HC+D
Sbjct: 99  LKERHITLHHCYD 111


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  LQDEHFLLYHCFD 71
           L++ H  L+HC+D
Sbjct: 99  LKERHITLHHCYD 111


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 132 EVFSSCDGR 106
           E+FS CDGR
Sbjct: 41  EIFSRCDGR 49


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 132 EVFSSCDGR 106
           E+FS CDGR
Sbjct: 41  EIFSRCDGR 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,757
Number of Sequences: 438
Number of extensions: 1928
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)