Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J23
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    28   4.0  
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR...    27   9.3  

>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 147 RLGGLEVFSSCDGRRESGDICEARTDQNSD 58
           RL G EV+SSCDG R      + R  + SD
Sbjct: 101 RLMGCEVYSSCDGIRRKNRSFKLRCLEESD 130


>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger) domain
          Length = 359

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 58  ITVLICACLAYVSALPSAIAGAEDLQPAE 144
           + + +C CL  + AL  A+AG E +  AE
Sbjct: 231 VGIALCCCLPCIIALLYAVAGTEGVSEAE 259


>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 981

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 147 RLGGLEVFSSCDGRRESGDICEARTDQNSDIVENVHLGV 31
           RLG LE++ S +  ++  D+ + R  +  +++E   +G+
Sbjct: 15  RLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGI 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,082,648
Number of Sequences: 28952
Number of extensions: 139060
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)