Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J22
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   5.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.0  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   8.7  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   8.7  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 221 FGESINKTVKKDKDADNLLDQYEDYEP 301
           FG S N T    KDA   LD Y++Y P
Sbjct: 379 FGNSYNVTRILTKDATFDLDAYQNYSP 405


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 418 LCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLV 308
           LC ++E   L   +SL +RAY    T P L   + L+
Sbjct: 414 LCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLI 450


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 494 MFKKLGLHQVATVKIVNSTIGYIAPNAFH--GVHDLYAVNLSNNNLKSLHP 640
           +FKKLG++ V   ++ NS       NA    G++ +  +N   +++   HP
Sbjct: 74  IFKKLGINTVRVYQVDNSADHDKCMNALSEAGIYVILDLNTYRHSISRAHP 124


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 413 YRFRGSCTWLVCIPEIQSICSL-WDRACPRCTKP 315
           Y    + TW     ++  IC + +D  CP+CT P
Sbjct: 8   YHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSP 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,479
Number of Sequences: 5004
Number of extensions: 51718
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)