Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J22
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 33 0.33
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 29 4.0
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 29 4.0
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18) 29 5.3
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 29 5.3
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 5.3
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 28 7.0
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012) 28 7.0
SB_25378| Best HMM Match : CNH (HMM E-Value=0.037) 28 7.0
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 28 9.3
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 542 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 625
N++I IAP+AF G+ +L ++NL +NN+
Sbjct: 137 NNSISAIAPHAFKGLDNLQSLNLRHNNI 164
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 320 LYNEDRPCPRDCICSVSQGYRQAK 391
L N + CP C C +S+GYR +K
Sbjct: 119 LDNVGKLCPSHCFCLLSRGYRASK 142
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 536 IVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 649
I N+ I I F V DL +NL NN + ++ +TF
Sbjct: 1120 IGNNLIKDIPSGVFANVRDLQVLNLHNNEITTIDEDTF 1157
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +1
Query: 520 GCYCKNREQH-----DWLYRPQCFPWCP*PLRSQP----IQQQPKEPS 636
G YC+N+EQ D+ +R C P P+ SQP IQ P EPS
Sbjct: 1314 GVYCRNKEQRSGKCKDFRFRFACSD-IPRPVPSQPSVPSIQDVPDEPS 1360
>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
Length = 1044
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 539 VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 652
V + I YI AF DL +NL+NN ++ + FA
Sbjct: 4 VRANIQYIDDFAFEKARDLVYINLANNPIEVIEEGAFA 41
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 278 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 448
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 490 EQLEDNPTVPLEEHIDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 545
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 240 KPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGP 341
K SRKTKT + +++ RNTK T+T P
Sbjct: 89 KTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKP 122
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 135 GXTEVKAFATXWGQGP-GSYYCSWQHARWYSANLSIKPSRKTKTPTTYWINMR 290
G T KA+ W QGP G S + W +L +P + W N R
Sbjct: 694 GYTYAKAYLIRWFQGPFGRLTTSVETMAWGDYSLQDRPQHHCRGSVGRWPNTR 746
>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
Length = 247
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 278 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 448
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 115 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 170
>SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)
Length = 346
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 221 FGESINKTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGY 379
F ES+ + + D +++ +ED P+++++ L D P P+ + +GY
Sbjct: 286 FDESLQLFARLETDPTHVIGLFEDLLPSDFRKQLEYPDEP-PKLLMSETEKGY 337
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 278 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 448
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 1089 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKPTQKAKKFKFNVYDIV 1144
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 278 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 448
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 359 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKPTQKAKKFKFNVYDIV 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,132,619
Number of Sequences: 59808
Number of extensions: 421412
Number of successful extensions: 1209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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