Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J22
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 32 0.38
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 32 0.38
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 2.7
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 29 4.7
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 4.7
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 4.7
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 29 4.7
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 28 8.1
AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm rece... 28 8.1
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 512 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 649
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 512 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 649
L + + + + I I P AF G+H+L+ + L NN+ L +TF
Sbjct: 310 LKNLTRLDLSKNIITEIQPKAFLGLHNLHTLVLYGNNITDLKSDTF 355
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 518 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 652
Q+ + + + + + + F G++DLY+++L N + ++ P FA
Sbjct: 331 QIQAIVLNKNRLSQVRADFFEGLNDLYSIDLQGNRIDNVQPLGFA 375
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 512 LHQVATVKIVNSTIGYIAPNAFHGVHD---LYAVNLSNNNLKSLHP 640
L Q+ + + ++ I Y+ NAF H L ++LS NNL ++HP
Sbjct: 131 LKQLKILSLPDNLIEYVQDNAFLSYHSRDSLLKLDLSANNLTAIHP 176
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +2
Query: 344 PRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV-VENADPRYPINLDDFMFKKLGLHQ 520
P C C +S+ C+ ++ T I V D + +N D + L +
Sbjct: 27 PEKCDCKISKSMIILSCNGEDVKT------IAQTVGTSQIDELHILNGTDVKIESLPFNG 80
Query: 521 VATVKIVNSTIGYIAPNAFHGVH-DLYAVNLSNNNLKSL 634
+ T+ I+NST+ +P A+ V + + ++ N LK++
Sbjct: 81 LRTIAILNSTLQSFSPTAWRHVEATIEHITINGNELKTV 119
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 422 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 595
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 596 YAVNLSNNNLKSLH 637
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 422 FGDDILDLVVENADPRYPI-NLDDFMFKKLGLHQVATVKIV-NSTIGYIAPNAFHGVHDL 595
FG L+ E PR+ I ++ MF++ +K + NS + Y+A N FH +
Sbjct: 2091 FGQTPSQLLTEAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQP 2150
Query: 596 YAVNLSNNNLKSLH 637
V ++ N + SL+
Sbjct: 2151 TVVGVAQNLVFSLN 2164
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 509 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 634
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 509 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSL 634
G+ + + + N + I AF G++ L + LSNNNL+++
Sbjct: 197 GMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQLILSNNNLENI 238
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 568 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 654
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 568 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 654
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>Z79598-2|CAB01864.1| 738|Caenorhabditis elegans Hypothetical
protein C44H4.2 protein.
Length = 738
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 509 GLHQVATVKIVNSTIGYIAPNA-FHGVHDLYAVNLSNNNLKSLHPETF 649
GL + + + N++I I F ++ LY +NL +N + S+H TF
Sbjct: 97 GLPNLLRLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKIFSIHTSTF 144
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 530 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 640
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 568 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 654
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 568 QCFPWCP*PLRSQPIQQQPKEPSS*DVCE 654
Q FP P PL SQP QQQP P CE
Sbjct: 348 QTFP-IPSPLGSQPQQQQPMGPIQCQGCE 375
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 530 VKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHP 640
+ I +S + +I P+AF+ + L ++LSNN L+ + P
Sbjct: 314 LSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVAP 350
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +2
Query: 494 MFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 652
MF ++ ++ + ++ I I+ +F + +L + LS+NN++++ TF+
Sbjct: 433 MFGSSSSSELKSLNLAHNKIHSISSRSFSDLDNLQQLRLSHNNIRTITSMTFS 485
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 517 PGCYCKNREQHDWLYRPQCFPWCP 588
P CYC RE+H L + +C W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175
>AF022974-5|AAC48036.3| 347|Caenorhabditis elegans Seven tm
receptor protein 208 protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 457 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 305
+ +++ ++ L C F + SV YR +AVSG + + + +F
Sbjct: 83 LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,513
Number of Sequences: 27780
Number of extensions: 309459
Number of successful extensions: 941
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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