Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J22
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 32 0.47
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 29 2.5
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 29 3.3
At2g06140.1 68415.m00675 hypothetical protein 29 3.3
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 29 4.4
At3g11330.1 68416.m01378 leucine-rich repeat family protein 28 5.8
At1g09910.1 68414.m01115 expressed protein 28 5.8
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put... 28 7.6
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 28 7.6
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 28 7.6
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 28 7.6
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 28 7.6
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 437 LDLVVENADPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSN 616
LDL +N P+ L GL V + + + + P F + L VNLS+
Sbjct: 505 LDLSKQNMSGEVPVELS-------GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSS 557
Query: 617 NNLKSLHPETF 649
N+ P+TF
Sbjct: 558 NSFSGEIPQTF 568
>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
receptor-like protein kinase (Ipomoea nil) (U77888)
Length = 1029
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 461 DPRYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAP 568
D + DF K+ LH+ TV +V + GYIAP
Sbjct: 863 DSNLEARIADFGLAKMMLHKNETVSMVAGSYGYIAP 898
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 222 SANLSIKPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGPVPETAYALYLRDT 380
+ L K S K P+T I + T+ RN+ R R V + A+ L L DT
Sbjct: 2036 NVRLQKKDSDGKKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDT 2088
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 227 ESINKTVKKDKDADNLLDQYEDYEPAEYQE 316
ES+++ + DK DNL + E +EP E +E
Sbjct: 588 ESLDRILDLDKKVDNLTTRIEGHEPMESEE 617
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 467 RYPINLDDFMFKKLGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPET 646
RY + F F + L+ + + + ++ + + P + L A+NLS+N L S P++
Sbjct: 683 RYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDS 742
Query: 647 FA 652
F+
Sbjct: 743 FS 744
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 560 IAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 652
+ P AF + L +NLSNN L+S+ P++ A
Sbjct: 212 LLPEAFGRIQGLLVLNLSNNKLESI-PDSIA 241
>At1g09910.1 68414.m01115 expressed protein
Length = 675
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 560 IAPNAFHGVHDLYAVNLSNNNL 625
IA + HGV+ LYAVN+ N L
Sbjct: 621 IARHGIHGVYMLYAVNIPGNRL 642
>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 911
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 572 AFHGVHDLYAVNLSNNNLKSLHPETFA 652
AF + L +++LSNNNLK + PE A
Sbjct: 429 AFRNLSLLESLDLSNNNLKGIVPEFLA 455
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 518 QVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLK-SLHPETFA 652
+V T+ + NS + P+ + +L ++NLSNN+L SL E FA
Sbjct: 76 RVVTLSLPNSNLVGSIPSDLGFLQNLQSLNLSNNSLNGSLPVEFFA 121
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 566 PNAFHGVHDLYAVNLSNNNLKSLHPETFA 652
P F G+ +L A+NLS+NNL + P++ +
Sbjct: 796 PVEFGGLLELRALNLSHNNLSGVIPKSIS 824
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 356 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 529
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 190 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 249
Query: 530 VKIVNSTI-GYIAPNAFHGVHDLYA 601
++ N GY A + + D+ A
Sbjct: 250 KEVDNIVAEGYPASQIINQLFDIVA 274
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 356 ICSVSQGYRQAKCSFLEIGTQKFGDDILDLVVENADPRYPINLDDFMFK--KLGLHQVAT 529
+ S+SQG + ++L+ T+ FG I + N P+ + + +F K G +A
Sbjct: 202 LSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIAN 261
Query: 530 VKIVNSTI-GYIAPNAFHGVHDLYA 601
++ N GY A + + D+ A
Sbjct: 262 KEVDNIVAEGYPASQIINQLFDIVA 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,595
Number of Sequences: 28952
Number of extensions: 284119
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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