Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J21
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 30 1.7
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14) 29 2.2
SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 2.8
SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64) 27 2.9
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 3.9
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.2
SB_58641| Best HMM Match : TSP_1 (HMM E-Value=0.0035) 28 6.9
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 28 6.9
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37) 28 6.9
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 28 6.9
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013) 28 6.9
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009) 25 8.1
SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 9.1
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 27 9.1
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 27 9.1
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 9.1
SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07) 27 9.1
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 9.1
SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17) 27 9.1
SB_2115| Best HMM Match : rve (HMM E-Value=0.091) 27 9.1
SB_41308| Best HMM Match : rve (HMM E-Value=6e-12) 27 9.1
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 27 9.1
SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 27 9.1
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 183 MENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGE 296
ME + P K++ + A ES +PP TP+PS E E
Sbjct: 171 METEPTPPPKEMPPQPAEESRTPPGSRSTPEPSLEEPE 208
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 144 VCGPLSPPSTPPLMENKV--ELPLKKIAAKRARESSSPP 254
VC P SPP TPP + PLKKI+ + +S P
Sbjct: 1651 VCLPESPPPTPPRHSQTAPQQSPLKKISTNQQCTDTSQP 1689
>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
Length = 870
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 231 ARESSSPPAGLVTPQPSDSEGEDEFSKRS 317
AR+ SPP TP+P + + ED+ RS
Sbjct: 4 ARQQISPPPNRGTPKPKELQDEDDLDARS 32
>SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +1
Query: 400 RTAPAVRSLCRPRPRTA*TCSRHLNLK*TEDTVIHKPNTLRAKRLLPFRSPFNLPVPHRR 579
R P C P CS L + + H +TLRA+R LP SPF H +
Sbjct: 13 RALPERHEACAPYRSEKSVCSP-LGISKVSRLLYHAEDTLRARRPLPGDSPFTQKGNHYK 71
Query: 580 LXKLAY 597
K AY
Sbjct: 72 --KTAY 75
>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 500
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 417 PEPLPPPPAHGMNML 461
P PLPPPP G N+L
Sbjct: 299 PPPLPPPPPSGGNIL 313
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 408 TCSPEPLPPPP 440
T P P PPPP
Sbjct: 290 TLPPPPPPPPP 300
>SB_20622| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
Length = 276
Score = 27.1 bits (57), Expect(2) = 2.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 417 PEPLPPPPAHGMNML 461
P PLPPPP G N+L
Sbjct: 75 PPPLPPPPPSGGNIL 89
Score = 20.6 bits (41), Expect(2) = 2.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 408 TCSPEPLPPPP 440
T P P PPPP
Sbjct: 66 TLPPPPPPPPP 76
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 305 QQAIPMRAGALASHDAAPGAVLQALGHHAGPQGRHLQSGASAAPARARHEHAQDT 469
Q+A P R H+A+P V ++ AGP + A+P R Q+T
Sbjct: 323 QEAGPSRVRDSTEHEASPRCVRDSMEQEAGPSRVRDSTEHEASPRCVRDSMEQET 377
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -3
Query: 186 PSTAALTAVRGVRKLRAEWTFWLEWEHSTDKNFLFNSQNLCYSLRASALGRCVD 25
P A + VR + E + W+H N + S +C+SL A C D
Sbjct: 95 PGPAIIEQVRNISSTILE----VRWQHPKKTNGILKSFKVCWSLEGGATSPCRD 144
>SB_58641| Best HMM Match : TSP_1 (HMM E-Value=0.0035)
Length = 50
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 135 EWTFWLEWEHSTDKNFLFNSQNLCYSLRASALGRCVDWLASDRR 4
+WT W W+ + D N+ Q C S + G+ A ++R
Sbjct: 4 DWTVWGPWQDNCDSNYEQTRQRSCTSPSPAHAGKKCSGDAVEKR 47
>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 452 HAVRGRGRQRLRTAGAV 402
HAVRGRGR R R +G +
Sbjct: 244 HAVRGRGRGRARRSGGI 260
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 153 PLSPPSTPPLME---NKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGE 296
PL P PLM K P++K AK A + PP ++P S S+GE
Sbjct: 846 PLQTPRKRPLMTLLAKKKRQPMRK--AKAAWDPRPPPPCPISPTISPSDGE 894
>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
Length = 700
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 452 HAVRGRGRQRLRTAGAV 402
HAVRGRGR R R +G +
Sbjct: 519 HAVRGRGRGRARRSGGI 535
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 452 HAVRGRGRQRLRTAGAV 402
HAVRGRGR R R +G +
Sbjct: 588 HAVRGRGRGRARRSGGI 604
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 414 SPEPLPPPPAHGMN 455
SP P PPPPAH +N
Sbjct: 582 SPPPHPPPPAHHVN 595
>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
Length = 388
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 452 HAVRGRGRQRLRTAGAV 402
HAVRGRGR R R +G +
Sbjct: 242 HAVRGRGRGRARRSGGI 258
>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 180 LMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 302
L + K+ + IA R +SP + L+TP PS S G D+
Sbjct: 221 LFDPKLAYSKEVIAIAHQRRITSPGSPLLTPTPSASYGIDQ 261
>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
Length = 340
Score = 24.6 bits (51), Expect(2) = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 417 PEPLPPPPAH-GMNMLKTLKFKMNRGHSYSQT 509
P PLPPPP + + TL K N+G+ + T
Sbjct: 168 PPPLPPPPPPIDLVDMSTLS-KFNKGYKFLLT 198
Score = 21.4 bits (43), Expect(2) = 8.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 414 SPEPLPPPP 440
SP P PPPP
Sbjct: 161 SPPPQPPPP 169
>SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 511
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 476 EPVSPAKPPSNPPL-EKKIPLALRRL 500
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 326 EPVSPAKPPSNPPL-EKKIPLALRRL 350
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 1128 EPVSPAKPPSNPPL-EKKIPLALRRL 1152
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 982 EPVSPAKPPSNPPL-EKKIPLALRRL 1006
>SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07)
Length = 555
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 520 EPVSPAKPPSNPPL-EKKIPLALRRL 544
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 1194 EPVSPAKPPSNPPL-EKKIPLALRRL 1218
>SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 425
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 390 EPVSPAKPPSNPPL-EKKIPLALRRL 414
>SB_2115| Best HMM Match : rve (HMM E-Value=0.091)
Length = 345
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 310 EPVSPAKPPSNPPL-EKKIPLALRRL 334
>SB_41308| Best HMM Match : rve (HMM E-Value=6e-12)
Length = 581
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 546 EPVSPAKPPSNPPL-EKKIPLALRRL 570
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 180 TAALTAVRGVRKLRAEWTFWLEWEHSTDKNFLFNSQNLCYSLRASALG 37
TAAL A+R +++ R+ + WE ++ ++ N++ + + S G
Sbjct: 309 TAALPAIRQLKQCRSSTSTVQGWEETSQRSIYRNTRTALFEIEYSPSG 356
>SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKI 218
E P PPS PPL E K+ L L+++
Sbjct: 983 EPVSPAKPPSNPPL-EKKIPLALRRL 1007
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 180 LMENKVELPLKKIAAKRARESSSPPAGL-VTPQPSDSEGED 299
L++ + PL ++ + SPP L +TP PSD +G +
Sbjct: 468 LLQRRGHPPLPRLRLRLTPLQPSPPQPLRITPPPSDQQGPE 508
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,092
Number of Sequences: 59808
Number of extensions: 330854
Number of successful extensions: 1393
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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