Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J21
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 36 0.016
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 36 0.016
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 36 0.016
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 36 0.016
At1g53800.1 68414.m06123 expressed protein 30 1.1
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 29 1.8
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 29 1.8
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 29 2.4
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.4
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.4
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.4
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.4
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.4
At3g08630.1 68416.m01002 expressed protein 28 4.2
At2g44060.2 68415.m05478 late embryogenesis abundant family prot... 28 5.6
At2g44060.1 68415.m05477 late embryogenesis abundant family prot... 28 5.6
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 28 5.6
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 28 5.6
At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1) iden... 27 7.4
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai... 27 7.4
At1g01030.1 68414.m00003 DNA-binding protein, putative similar t... 27 7.4
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 9.8
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 27 9.8
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 27 9.8
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 27 9.8
At3g50650.1 68416.m05540 scarecrow-like transcription factor 7 (... 27 9.8
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 27 9.8
At3g01870.1 68416.m00132 hypothetical protein 27 9.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 9.8
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 174 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 278
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 916 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 950
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 174 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 278
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 913 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 947
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 174 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 278
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 174 PPLMENKVELPLKKIAAKRARESSSPPAGLVTPQP 278
PP M +K LP +IAA A + PP G+ P+P
Sbjct: 915 PPSMSSKASLPTNRIAANFANVAQRPPMGMAFPRP 949
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +3
Query: 36 SLERKRAANNTSFVN*KESFYLLNVPILTRMSTLLEVCGPLSPPSTPPLMENK--VELPL 209
S+ KR A + ++ E LL + + + +LE+ SP + L+E+K +
Sbjct: 348 SIRAKRVAEESKKMDAVERARLL-ISEAEKAAKVLEIAALKSPVAQASLLESKKLIAEAT 406
Query: 210 KKIAAKRARESSSPPAG----LVTPQPSDSEGE 296
+ I + R+ +S G L++PQP+DSE E
Sbjct: 407 QLIKSLEMRQIASDEDGTYPFLLSPQPNDSESE 439
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 253 GGDDDSLARFAAIFLRGSSTLFSINGGVDGGERG 152
G +DD RF + G S F + GG GE G
Sbjct: 137 GPEDDENGRFPPVIAGGHSGEFPVGGGYGNGEHG 170
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 21/55 (38%)
Frame = +3
Query: 108 VPILTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTP 272
VP+ L+ PL PP PPLM + P +R PP L P
Sbjct: 13 VPLPPPPPPLMRRRAPLPPPPPPPLMRRRAPPPPPPPLMRRRAPPPPPPPPLPRP 67
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 111 PILTRMSTL--LEVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSD 284
P+L S+L P+ PPS PP M +P +A G V SD
Sbjct: 21 PVLQDASSLPGFSAIPPVVPPSFPPPMAPIPMMPHPPVARPPTFRPPVSQNGGVKTSDSD 80
Query: 285 SEGEDE 302
SE +DE
Sbjct: 81 SESDDE 86
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 472
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 473 I*NEPRTQLFTNQIHCEPN 529
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 472
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 473 I*NEPRTQLFTNQIHCEPN 529
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 472
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 473 I*NEPRTQLFTNQIHCEPN 529
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 472
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 473 I*NEPRTQLFTNQIHCEPN 529
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 299 RVQQAIPMRAGALASHDAAPGAVLQALGHHAGP--QGRHLQSGASAAPARARHEHAQDT* 472
R++Q PM + H A A+L++ +H G QG H Q G SAA + + Q T
Sbjct: 143 RMKQPNPMNSETSQPHLDARMALLKSATNHHGQIVQGNH-QGGVSAALQQIQSRTQQPTE 201
Query: 473 I*NEPRTQLFTNQIHCEPN 529
I E Q+ +P+
Sbjct: 202 IKTEVNLGTSPRQLPVDPS 220
>At3g08630.1 68416.m01002 expressed protein
Length = 339
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 475 NLSVLSMFMPCAGGGGRGS 419
N S ++ +PCAGGGG GS
Sbjct: 49 NFSSPNIMVPCAGGGGGGS 67
>At2g44060.2 68415.m05478 late embryogenesis abundant family protein
/ LEA family protein similar to ethylene-responsive late
embryogenesis-like protein [Lycopersicon esculentum]
GI:1684830; contains Pfam profile PF03168: Late
embryogenesis abundant protein
Length = 325
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 99 LLNVPILTRMSTLLEVCGPLSPPSTPPLMENKVE 200
+++VP+L R++ LE CG + P P + K++
Sbjct: 167 IVDVPVLGRLTLPLEKCGEIPIPKKPDVDIEKIK 200
>At2g44060.1 68415.m05477 late embryogenesis abundant family protein
/ LEA family protein similar to ethylene-responsive late
embryogenesis-like protein [Lycopersicon esculentum]
GI:1684830; contains Pfam profile PF03168: Late
embryogenesis abundant protein
Length = 325
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 99 LLNVPILTRMSTLLEVCGPLSPPSTPPLMENKVE 200
+++VP+L R++ LE CG + P P + K++
Sbjct: 167 IVDVPVLGRLTLPLEKCGEIPIPKKPDVDIEKIK 200
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 141 EVCGPLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGED 299
EV L PS PP + + P + AK+A+ ++ V+PQ E +D
Sbjct: 248 EVVEELKVPSAPPYIPSPPPSPPRPPPAKQAKRKTNRVYQDVSPQEEKKERDD 300
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 399 KDGTCSPEPLPPPP 440
K +C P PLPPPP
Sbjct: 73 KKSSCPPSPLPPPP 86
>At3g13110.1 68416.m01641 serine O-acetyltransferase (SAT-1)
identical to serine acetyltransferase (Sat-1) GI:1184048
[Arabidopsis thaliana]
Length = 391
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 375 PSVIMRAHKDGTCSPEPLPPPP 440
PS + K T SP P PPPP
Sbjct: 32 PSFVSSKFKHHTLSPPPSPPPP 53
>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
domain-containing protein contains Pfam profile PF01556:
DnaJ C terminal region
Length = 438
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 117 LTRMSTLLEVCGPLSPPSTPPLMENKVELPLKKI 218
++R ST V +PP PP +E K+E L+++
Sbjct: 237 ISRRSTTPIVFSQSTPPKKPPAVEKKLECTLEEL 270
>At1g01030.1 68414.m00003 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857, RAV2 GI:3868859; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 358
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 423 PLPPPPAHGMNMLKTLKFKMNRGHSYSQ 506
PLPPPP+ L+ M G+ Y+Q
Sbjct: 272 PLPPPPSTAGKRLRLFGVNMECGNDYNQ 299
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 165 PSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTP-QPSDS 287
PS P K P+ +A A S PP V+P QP S
Sbjct: 143 PSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKS 184
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Frame = +3
Query: 153 PLSPPSTPPLMENKVELPL------KKIAAKRARESSSPPAGLVTPQPSDS 287
PL PP PP EN P+ AA + E+ +PP L P + S
Sbjct: 24 PLPPPGYPPRSENPNLFPVGQSSTSSAAAAVKPSENVAPPFSLTMPVENSS 74
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 289 SESEGWGVTRPAGGDDDSLARFAAIFLRGSSTLFSINGG 173
S E + P GG ++ F + G S+L S GG
Sbjct: 697 SRDENGSIVAPGGGSGGTVLLFLRYLILGESSLLSSGGG 735
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 104 ECSHSNQNVHSARSLRTPLTAVNAAVDGK*SRAASQKDCRKTGERVVVAARRPG 265
E H +QNVHS S +VN A +G + + K+ T + VA G
Sbjct: 193 EDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEASTTVTIGVADEHIG 246
>At3g50650.1 68416.m05540 scarecrow-like transcription factor 7
(SCL7)
Length = 542
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 375 PSVIMRAHKDGTCSPEPLPPPPA 443
PS + R +KD + S + LPPPPA
Sbjct: 126 PSYLNRVNKDDSAS-QQLPPPPA 147
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 153 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFSK 311
P PP PP + + P+ K AR+ + P L+ + S SE D +
Sbjct: 159 PQHPPPPPPQPDFDLNQPIFKAIHDYARKPETKPDTLIRIKESVSESGDPIQR 211
>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase (PG1) GI:5669846,
(PG2) GI:5669848 [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 470
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 207 LKKIAAKRARESSSPPAGLVTPQPSDSEGEDEFS 308
+KKI K R S + P G P P S E F+
Sbjct: 35 VKKIKPKHRRHSKNTPTGSPAPAPYPSTNEGVFN 68
>At3g01870.1 68416.m00132 hypothetical protein
Length = 583
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 405 GTCSPEPLPPPPAHGMNMLKTLKFKMNRGHSYSQT 509
GT S +PL PP + LK KF ++ S++QT
Sbjct: 251 GTFSCQPLNIPPPPPLFCLKNTKFDLSSMPSHNQT 285
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 153 PLSPPSTPPLMENKVELPLKKIAAKRARESSSPPAGLVTPQPSDSEGEDE 302
P S P + P +VE P + SSSP P P +++ +D+
Sbjct: 774 PSSEPVSSPEQSEEVEAPEPTPVNPSSVPSSSPSTDTSIPPPENNDDDDD 823
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,987,147
Number of Sequences: 28952
Number of extensions: 244283
Number of successful extensions: 1166
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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