Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J20
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39440.1 68415.m04841 expressed protein                             29   2.4  
At5g27260.1 68418.m03252 hypothetical protein                          29   3.2  
At4g04020.1 68417.m00572 plastid-lipid associated protein PAP, p...    28   5.6  
At3g44460.1 68416.m04779 basic leucine zipper transcription fact...    28   5.6  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    27   7.4  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    27   9.7  

>At2g39440.1 68415.m04841 expressed protein
          Length = 773

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 401 VMPTDPKCRCGKRTLIRYGAIFKRESNKFTKNSTWSRDD 517
           V+  D  C  GKR L+    IF++   K+   ++W R D
Sbjct: 632 VLLGDKNCVPGKRDLVITPKIFEKLEKKYYTETSWKRSD 670


>At5g27260.1 68418.m03252 hypothetical protein
          Length = 303

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 KRRYIDLYTHVYNYCTSVHHHSA 576
           ++ Y+D + +VY Y T+ HH S+
Sbjct: 167 RKEYVDDFDNVYEYDTTTHHESS 189


>At4g04020.1 68417.m00572 plastid-lipid associated protein PAP,
           putative / fibrillin, putative strong similarity to
           plastid-lipid associated proteins PAP1 GI:14248554, PAP2
           GI:14248556 from [Brassica rapa], fibrillin [Brassica
           napus] GI:4139097; contains Pfam profile PF04755:
           PAP_fibrillin
          Length = 318

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 NANRPQVPLRQKDFDQIWGDLQEGIEQVY 489
           + +RP   +R  D D  WG  Q+G+E+V+
Sbjct: 46  SVHRPDFKIRATDIDDEWG--QDGVERVF 72


>At3g44460.1 68416.m04779 basic leucine zipper transcription factor
           (BZIP67) identical to basic leucine zipper transcription
           factor GI:18656053 from [Arabidopsis thaliana];
           identical to cDNA basic leucine zipper transcription
           factor (atbzip67 gene) GI:18656052
          Length = 331

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 421 VPLRQKDFDQIWGDLQEGIEQ 483
           VPL +K  D++W ++Q G++Q
Sbjct: 103 VPLCKKTVDEVWLEIQNGVQQ 123


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 439 DFDQIWGDLQEGIEQVYK------KQYMVKRRYIDLYTHVYNYCTSVHHH 570
           D +Q W  +Q GI ++ +      +      +Y+ LYT +YN CT    H
Sbjct: 7   DLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPH 56


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 460 DLQEGIEQVYKKQYMVKRRYIDLYTHVYNYCTSVHHH--SAGSSSRVP 597
           ++Q  ++Q  ++Q  +  +    YTH ++Y  + HHH  SAG S   P
Sbjct: 527 NVQMAMQQQQQQQMTMMHQSPYNYTHPHDYHQNHHHHQFSAGPSPSNP 574


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,427,824
Number of Sequences: 28952
Number of extensions: 184709
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)