Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J19
(526 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 68 2e-13
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 62 8e-12
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 62 1e-11
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 61 2e-11
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 60 3e-11
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 60 3e-11
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 57 4e-10
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 57 4e-10
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 55 2e-09
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 55 2e-09
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 53 5e-09
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 52 2e-08
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 41 3e-05
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 32 0.010
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 27 0.51
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 68.1 bits (159), Expect = 2e-13
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 162
++AA V GI F+S+Y P PSL Q + + + + +I GDFN+ HT WGS
Sbjct: 77 LVAAKVAGIDFISVYAP-PSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRR 135
Query: 161 SNSYGYELLDXLDMYSLCILNSG-APTRLTKPGEVISAIDLSICTPQLAAALAW 3
+N G ELL +++ L ILN+G APT + + S ID++ TP L W
Sbjct: 136 NNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATPSLVLHDTW 189
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 62.5 bits (145), Expect = 8e-12
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Frame = -3
Query: 365 SSFPLPS--HSNCFSVIAAIVDGICFVSIYV----PHPSLQIFNEIKNLISVLPRPFMIL 204
SS+P+ S ++AA + GI F+S Y P + F L + +I
Sbjct: 82 SSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVVID 141
Query: 203 GDFNSHHTSWGSSVSNSYGYELLDXLDMYSLCILNSG-APTRLTKPGEVISAIDLSICTP 27
GDFN+ HT WGS+ ++ G +LL + L ++NSG PT + + S ID+ TP
Sbjct: 142 GDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATP 201
Query: 26 QLAAALAW 3
+A W
Sbjct: 202 SIARPETW 209
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 62.1 bits (144), Expect = 1e-11
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNL--ISVLPRPFMILG-DFNSHHTSWGSSVS 159
++AA + GI F+S Y P ++ F E N I V P ++LG DFN+ H +WGS+ +
Sbjct: 75 LVAADIGGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSART 134
Query: 158 NSYGYELLDXLDMYSLCILNSGAPTRLTKPGEV-ISAIDLSICTPQLAAALAW 3
G ELL+ ++ L +LN G + T G S ID++ +P + W
Sbjct: 135 KRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASPSIVRYNTW 187
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 61.3 bits (142), Expect = 2e-11
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSIYVP--HPS--LQIFNEIKNLISVLPRPFMILGDFNSHHTSW 174
SN ++AA + G F+S Y P P+ + F E L ++ +I GDFN+ H W
Sbjct: 73 SNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEW 132
Query: 173 GSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPG-EVISAIDLSICTPQLAAALAW 3
GS ++ G ELL + L +LN G + G S +D++ TP +A W
Sbjct: 133 GSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVDVAFATPTIAQPGTW 190
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 60.5 bits (140), Expect = 3e-11
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRP------FMILGDFNSHHTSWGSS 165
++AA V GI F+S+Y P PSL +E + L+ + ++ GDFN+ H WGS
Sbjct: 140 LVAAQVAGITFISVYAP-PSLSA-HEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSG 197
Query: 164 VSNSYGYELLDXLDMYSLCILNSG-APTRLTKPGEVISAIDLSICTPQLAAALAW 3
+ G ELL ++ L ILN G PT + + S ID+S + ++ W
Sbjct: 198 RNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFASREIVRPDTW 252
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 60.5 bits (140), Expect = 3e-11
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Frame = -3
Query: 323 IAAIVDGICFVSIYVPHP-SLQIFNEIKNLIS---VLPRPFMILGDFNSHHTSWGSSVSN 156
+ A+++ I F S Y P L+ F E+ IS P +I GDFN+ T WGS +N
Sbjct: 75 VIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTN 134
Query: 155 SYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALAW 3
+ G +L+ +L ++N G + S IDL+ C+P LA+++ W
Sbjct: 135 ARGNAVLEHFSRLNLVLVNVGFCPTFVRNSRT-SIIDLTFCSPALASSMNW 184
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 56.8 bits (131), Expect = 4e-10
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPR--PFMIL-GDFNSHHTSWGSSVS 159
++ A V+GI V YV P+ ++ F EI I +L R P ++L GDFN+ HT+WGS +
Sbjct: 75 IVVADVNGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERT 134
Query: 158 NSYGYELLDXLDMYSLCILNSGAPTRLTKPGEV-ISAIDL-----SICTPQLAA--ALAW 3
G LL ++ L +LN G G S ID+ SIC P LAA A W
Sbjct: 135 KPKGIALLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRPDLAANSATCW 194
Score = 23.4 bits (48), Expect = 4.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 22 NWGVQMDRSMALITS 66
NW V D+S+A++TS
Sbjct: 44 NWVVDRDKSVAIVTS 58
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 56.8 bits (131), Expect = 4e-10
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Frame = -3
Query: 401 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVL 225
G +I +S T+ + S + + AA ++ + F+ YV P + F E+ I VL
Sbjct: 51 GKVAIIASSETYPVQQVVSVTQS-GIAAARINDVLFICCYVSPSAGVSEFEEVMQRIDVL 109
Query: 224 PR--PFMIL-GDFNSHHTSWGSSVSNSYGYELLDXLDMYSLCILNSG-APTRLTKPGEVI 57
R P ++ GD N+ HT+WGS +N+ G ++ +D L +LN+G APT L
Sbjct: 110 ARGHPRVVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARP 169
Query: 56 SAIDLSICTPQLA 18
S +D++ + +A
Sbjct: 170 SVVDVAFASSSIA 182
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 54.8 bits (126), Expect = 2e-09
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSIYVPHPSLQI-----FNEIKNLISVLPRPFMILGDFNSHHTS 177
S ++AA + G+ F+S Y P PSL + F E L ++ GDFN+ H
Sbjct: 83 SEAQGLVAAQIGGVVFISCYAP-PSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEE 141
Query: 176 WGSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVI-SAIDLSICTPQLAAALAW 3
WGS + G EL ++ L ++N G G + S +D++ +P +A W
Sbjct: 142 WGSPRTCDRGEELHGMVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTW 200
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 54.8 bits (126), Expect = 2e-09
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Frame = -3
Query: 341 SNCFSVIA-AIVDGICFVSIYVPHPS--LQIFNE-IKNLISVLP--RPFMILGDFNSHHT 180
SN F A V+G+ F S Y P PS L+ F+ + NL++ L RP +I GDFN+
Sbjct: 66 SNTFEGFCIAEVNGVFFCSCYAP-PSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAV 124
Query: 179 SWGSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALAW 3
WGS +NS G +L+ + + N+G + + S +D++ C+ L+ L W
Sbjct: 125 EWGSKRTNSRGDAVLESFARLGVTLGNAGTTPTFNR-NKRTSIVDITFCSTTLSERLNW 182
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 53.2 bits (122), Expect = 5e-09
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 162
+IAA V GI F+S Y P PSL + F E I + + ++ GDFN+ H WGS
Sbjct: 134 LIAAKVGGITFLSCYAP-PSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGSRR 192
Query: 161 SNSYGYELLDXLDMYSLCILNSGAPTRLTKPG-EVISAIDLSICTPQLAAALAW 3
SN G LL+ L ++N G G S +D++ + +A W
Sbjct: 193 SNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASSSIAQPSTW 246
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 51.6 bits (118), Expect = 2e-08
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -3
Query: 344 HSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPRP---FMILGDFNSHHTS 177
H V+AA V G VS YV P + F I I ++ R ++ GDFN+ H
Sbjct: 70 HRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLD 129
Query: 176 WGSSVSNSYGYELLDXLDMYSLCILN 99
WGSS + G ELL D L +LN
Sbjct: 130 WGSSRTCPKGLELLQLADNLGLVLLN 155
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 40.7 bits (91), Expect = 3e-05
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Frame = -3
Query: 326 VIAAIVDGICFVSIYVPHP-SLQIFNEI-KNLISVLP--RPFMILGDFNSHHTSWGSSV- 162
++A V GI VS Y P ++Q F E+ N++ + F++ GDFN+ +SW +++
Sbjct: 75 MLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLG 134
Query: 161 -----SNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALAW 3
G LL + ++N+G T +T E SAIDL+ + L W
Sbjct: 135 ARGESQRLRGDTLLAAFAGLEMVLMNNGQDTFVTP--ERKSAIDLTFVSQSLMETTGW 190
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 32.3 bits (70), Expect = 0.010
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Frame = -3
Query: 293 VSIYVPHP-SLQIFN-EIKNLISVLP--RPFMILGDFNSHHTSWGSSV------SNSYGY 144
VS+Y P S++ F + N + + F+I GDFN+ SW + + G
Sbjct: 84 VSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQKRRGE 143
Query: 143 ELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALAW 3
+L +LN G+ PG S +DL+ + +A + W
Sbjct: 144 LVLSTFAQIDAILLNDGSTPTYVGPGRT-SVVDLTFASRTVARSFKW 189
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 26.6 bits (56), Expect = 0.51
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Frame = -3
Query: 497 IFSLSETWLK---PDFVFKIPGYSCLREDRA-----DGYGGVCLLIRNSSTFSSFPLPSH 342
+ +L+ETWL P + +S R DR+ GGV L + N+ + S LPS
Sbjct: 108 LIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSSSRGGGVLLAVSNA--YESIELPSR 165
Query: 341 SNCFSVIAAIVD----GICFVSIYVPHPSLQIFNEIKNL--------ISVLPRPFM-ILG 201
I V + + +Y+P + +++L + + P + ++G
Sbjct: 166 DRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIG 225
Query: 200 DFNSHHTSWGSSVSNS 153
DFN SW ++ +S
Sbjct: 226 DFNQPSISWSTADPSS 241
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,844
Number of Sequences: 2352
Number of extensions: 9156
Number of successful extensions: 45
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48205926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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