Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J19
(526 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 69 4e-12
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 60 2e-09
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 52 4e-07
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 50 1e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 50 2e-06
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 50 3e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 48 6e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 8e-06
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 1e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 43 2e-04
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 43 3e-04
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.002
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.10
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 33 0.24
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 32 0.41
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 32 0.41
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 32 0.41
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 32 0.41
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 32 0.55
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 30 1.7
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 30 1.7
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 30 1.7
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 28 8.9
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 68.9 bits (161), Expect = 4e-12
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Frame = -3
Query: 521 IINTFNPFIFSLSETWLKPDFVFKIP-GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPS 345
+I ++P I SL ET ++ P Y L + +GGV LL+ S + +
Sbjct: 23 LIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITI 82
Query: 344 HSNCFSVIAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGS 168
++ + S Y+ P+ I N+ + N ++ P +I GDFN H WGS
Sbjct: 83 DIEAIAINIESKLKLNIFSTYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGS 141
Query: 167 SVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALAW 3
+N G +D L +LN +PT + + IDL++C+P LA W
Sbjct: 142 PTTNKRGKITHRFIDNMHLILLNDKSPTHFS-THNTYTHIDLTLCSPILAPHAKW 195
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/133 (27%), Positives = 67/133 (50%)
Frame = -3
Query: 401 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLP 222
G+ +LI+ + + + S C ++ I V+ Y+P + ++I ++ L
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLN 127
Query: 221 RPFMILGDFNSHHTSWGSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDL 42
++LGD NS WGS +N+ G ++ + SL +LN G+PT L+ + ID+
Sbjct: 128 GSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDI 186
Query: 41 SICTPQLAAALAW 3
S+ +PQ+A +W
Sbjct: 187 SLISPQIAHMCSW 199
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 52.4 bits (120), Expect = 4e-07
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Frame = -3
Query: 497 IFSLSETWLKPDFVFKIPGYSCLREDRADG---YGGVCLLIRNSSTFSSFPLPSHSNCF- 330
+ LSET K K+ G+ + G GG +LI+NS + FPL +
Sbjct: 32 VLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNS--LAHFPLTPIATAKV 89
Query: 329 ----SVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSV 162
+VI + I F ++Y P +E K+++ F++ GD+N+ H WG+
Sbjct: 90 QLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGR 149
Query: 161 SNSYGYELLDXLDMYSLCILNSGAPTR 81
SN G L + + + L +G PTR
Sbjct: 150 SNQRGIALANLVLNSEVDSLATGGPTR 176
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Frame = -3
Query: 317 AIVDGICFVSIYVP-HPSLQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNSY 150
A + GI F S Y P S + F + ++ L++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 149 GYELLDXLDMYSLCILNSG-APTRLTKPGEVISAIDLSICTPQLAAALAW 3
G ++D +++ L +LN G PT G S ID++ + L A W
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPTFNNDRG--TSFIDVTFVSRVLVAGSNW 189
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Frame = -3
Query: 497 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSSTFSSFP--LPSHSNCF 330
+ LSET L + F+I Y + DG +GG +LIRN + +H
Sbjct: 32 VMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQAT 91
Query: 329 SVIAAIVDG--ICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSN 156
S+ + D + ++Y P + + + L F+ GD+N+ HT WGS + N
Sbjct: 92 SINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVN 151
Query: 155 SYGYEL 138
G +L
Sbjct: 152 PKGKQL 157
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 49.6 bits (113), Expect = 3e-06
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Frame = -3
Query: 497 IFSLSETWLKPDFVFKIPGYSCLREDRA----DGYGGVCLLIRNSSTFSSFPL----PSH 342
I ++E LK KI GY+ R + GGV + +R +T FP H
Sbjct: 32 ILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR--TTLRHFPQRVIETRH 89
Query: 341 SNCFSV-IAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGS 168
SV +A + + F +IY PS +I ++I + +++ GD+N+ H WG
Sbjct: 90 IQLSSVKVATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGD 148
Query: 167 SVSNSYGYELLDXLDMYSLCILNSGAPTRLT-KPGEVISAIDLSI 36
+ ++ G EL + L + IL +G+PTR P S ID ++
Sbjct: 149 TCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV 193
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.4 bits (110), Expect = 6e-06
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Frame = -3
Query: 497 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 333
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 332 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVS 159
S+ + +G ++Y P P I ++ + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 158 NSYGYELLDXLDM--YSLCILNSGAPTRL-TKPGEVISAIDLSI 36
+ G +L + L L ++ G PT P ++ ID +I
Sbjct: 150 SPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.0 bits (109), Expect = 8e-06
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Frame = -3
Query: 497 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 333
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 332 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVS 159
S+ + +G ++Y P P I ++ + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 158 NSYGYELLDXLDM--YSLCILNSGAPTRL-TKPGEVISAIDLSI 36
G +L + L L ++ G PT P ++ ID +I
Sbjct: 150 TPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 47.6 bits (108), Expect = 1e-05
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Frame = -3
Query: 488 LSETWLKPDFVFKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSV 324
++ETWL F IP Y+ R DR + GG V + + N+ P + SH N +
Sbjct: 43 INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQI 102
Query: 323 IAAIVDGICFVSIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDF 195
+ SIY + + N +K+L IS + F+I GDF
Sbjct: 103 NTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDF 162
Query: 194 NSHHTSWGSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAA 15
NS H +W + +N +G L + D+ IL PT + A L +C +
Sbjct: 163 NSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDLCLTNIPN 221
Query: 14 ALA 6
LA
Sbjct: 222 QLA 224
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Frame = -3
Query: 485 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 321
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 320 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 141
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 140 LLDXLDMYSLCILNSGAPTRLT-KPGEVISAIDLSI 36
L + + +L +G PT + P SA+D I
Sbjct: 158 LQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFI 193
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 42.7 bits (96), Expect = 3e-04
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Frame = -3
Query: 485 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 321
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 320 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 141
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 140 LLDXLDMYSLCILNSGAPT 84
L + + +L +G PT
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.9 bits (89), Expect = 0.002
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%)
Frame = -3
Query: 455 FKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSVIAAIVDGICFV 291
F IP Y+ R DR + GG V + + N+ P + SH N + +
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 290 SIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDFNSHHTSWGSSV 162
SIY + + N +K+L IS + F+I GDFNS H +W +
Sbjct: 62 SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121
Query: 161 SNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVISAIDLSICTPQLAAALA 6
+N +G L + D+ IL PT + A L +C + LA
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDLCLTNIPNQLA 172
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 34.3 bits (75), Expect = 0.10
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 165
+N S + I C S+ ++PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 164 VSNSYGYELLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
+ G L + + S I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 33.1 bits (72), Expect = 0.24
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 18/158 (11%)
Frame = -3
Query: 452 KIPGY-SCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIV--------DGI 300
++PGY + L ++ A G I NSS P C ++ + I
Sbjct: 66 ELPGYFTYLAQNPASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMI 125
Query: 299 CFVSIYVPHPSLQI----FNEIKNLISVL---PRPFMILGDFNSHHTSWGSSVSNSYGYE 141
S+Y P PSL F ++ N ++ GD+N+ H WG + G
Sbjct: 126 VIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAA 184
Query: 140 LLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
L D + S+ I+ +G+ T + SAID SIC
Sbjct: 185 LYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC 222
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 165
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 164 VSNSYGYELLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 165
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 164 VSNSYGYELLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 165
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 68 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 126
Query: 164 VSNSYGYELLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
+ G L + + + I+ +G T + SAID SIC
Sbjct: 127 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 172
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 341 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 165
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 164 VSNSYGYELLDXLDMYSLC-ILNSGAPTRLT-KPGEVISAIDLSIC 33
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.9 bits (69), Expect = 0.55
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -3
Query: 278 PHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDXLDMYSLC-IL 102
PH + N + + + F++ GD+N+ H WG + + G L + + + I+
Sbjct: 12 PHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEII 70
Query: 101 NSGAPTRLT-KPGEVISAIDLSIC 33
+G T + SAID SIC
Sbjct: 71 ATGCATHFPHDTRKNPSAIDFSIC 94
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 263 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDXLDMYSLCILNSGAP 87
++FN + L+ + F++ GD+N H WG+ +S + G L L L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 86 TRLT-KPGEVISAIDLSIC 33
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 263 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDXLDMYSLCILNSGAP 87
++FN + L+ + F++ GD+N H WG+ +S + G L L L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 86 TRLT-KPGEVISAIDLSIC 33
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 263 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDXLDMYSLCILNSGAP 87
++FN + L+ + F++ GD+N H WG+ +S + G L L L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 86 TRLT-KPGEVISAIDLSIC 33
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 203 GDFNSHHTSWGSSVSNSYGYELLDXLDMYSLCILNSGAPTRLTKPGEVIS 54
GD+N+ H WG+ N G L + + + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,050
Number of Sequences: 53049
Number of extensions: 412560
Number of successful extensions: 910
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1949978112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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