Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J19
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    29   2.5  
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    29   2.5  
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    28   3.3  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   5.8  
At2g34820.1 68415.m04275 basic helix-loop-helix (bHLH) family pr...    27   7.7  

>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 311 VDGICFVSIYVPHPSLQIFNEIKNL 237
           +DG C VS  +PH   Q+ +E+K L
Sbjct: 247 IDGSCLVSSPLPHTISQLMHEVKEL 271


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 295 KQIPSTIAAMTEKQLLCEGRGKEEKVLEFLMSR 393
           K++ +++AA    Q++C   GKE++++   +SR
Sbjct: 164 KELSASMAARKSLQMMCSSLGKEKEIMALELSR 196


>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 382 LMSRHTPPYPSALSSLKHE*PGILNTKSGFSQVS 483
           ++ RH  P  S+ SSLKHE P +L+  +  S+VS
Sbjct: 10  ILLRHLNPVSSSNSSLKHE-PSLLSPVNCVSEVS 42


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 239 LISVLPRPFMILGDFNSHHTSWGSSVSNSYGY 144
           L   LP    +LG   S+ T W SS S ++GY
Sbjct: 69  LACALPSHLSLLGSL-SYATHWSSSTSRAFGY 99


>At2g34820.1 68415.m04275 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 291

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 287 IYVPHPSLQIFNEIKNLISVLPRP 216
           I++P+P  +IFNE  +L   LP P
Sbjct: 74  IFLPNPKNEIFNETHDLDFFLPTP 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,853
Number of Sequences: 28952
Number of extensions: 194710
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)