Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J18
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       175   2e-44
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       175   2e-44
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       128   6e-30

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  175 bits (427), Expect = 2e-44
 Identities = 86/194 (44%), Positives = 114/194 (58%), Gaps = 2/194 (1%)
 Frame = +3

Query: 69  KLFFFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAX 248
           ++ FFHD                       K   R+L++G ++E+I TIIPA  LIFIA 
Sbjct: 27  EIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAF 86

Query: 249 XXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLL 422
                           +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL
Sbjct: 87  PSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLL 146

Query: 423 DVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQC 602
           +VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQC
Sbjct: 147 EVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQC 206

Query: 603 SEICGANHSFIPIV 644
           SEICGANHSF+PIV
Sbjct: 207 SEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  175 bits (427), Expect = 2e-44
 Identities = 86/194 (44%), Positives = 114/194 (58%), Gaps = 2/194 (1%)
 Frame = +3

Query: 69  KLFFFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAX 248
           ++ FFHD                       K   R+L++G ++E+I TIIPA  LIFIA 
Sbjct: 27  EIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAF 86

Query: 249 XXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLL 422
                           +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL
Sbjct: 87  PSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLL 146

Query: 423 DVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIFFGQC 602
           +VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI RPG+F+GQC
Sbjct: 147 EVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQC 206

Query: 603 SEICGANHSFIPIV 644
           SEICGANHSF+PIV
Sbjct: 207 SEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  128 bits (308), Expect = 6e-30
 Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
 Frame = +3

Query: 69  KLFFFHDHTXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAX 248
           ++ FFHD                       K   R+L++G ++E+I TIIPA  LIFIA 
Sbjct: 27  EIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAF 86

Query: 249 XXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLL 422
                           +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL
Sbjct: 87  PSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLL 146

Query: 423 DVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNFFINRPGIF 590
           +VD               TA DVIHS  +P+L VK+DA PGRLNQT FFI +   F
Sbjct: 147 EVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,223
Number of Sequences: 59808
Number of extensions: 204810
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)