Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J16
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 169 2e-42
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 167 7e-42
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 70 1e-12
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.8
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.4
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.4
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.8
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 27 9.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 27 9.8
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 27 9.8
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 9.8
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 169 bits (411), Expect = 2e-42
Identities = 83/168 (49%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELET-NSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QA +LE N +LK++L+ LYI A +++ N+ +++I+VP KAF+K +RLVRE
Sbjct: 24 AQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGK
Sbjct: 84 LEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
RIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 140 RIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 167 bits (406), Expect = 7e-42
Identities = 84/167 (50%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Frame = +3
Query: 105 QALVELET-NSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVREL 278
QA +LE N +LK+ L+ LYI A ++L N+ ++IIYVP KA++K +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 279 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 458
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 459 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 70.1 bits (164), Expect = 1e-12
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +3
Query: 207 IIIYVPMPKLKAFQKXQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 386
++I+V KAF+K +RLV+ELEKKFSGK VVF R+I+ +P +K + PR+
Sbjct: 46 VVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRT 101
Query: 387 RTLTSVYDAILEDLVFPAEIVG 452
RTL +V+D ILED+V ++G
Sbjct: 102 RTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 429 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 536
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 378 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 494
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 373 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 257
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 383 AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLXLLKGLQF 231
AW L +S+++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 4 PADAFPPXQVVNLRPHLIKARGAXADSFXSLVSRRRWSNSKPTPTSKPNFGXFTLQKLKX 183
PAD + ++V R AR AD F + R+++ SKP F L +
Sbjct: 143 PADVYQQVEIVQRRRGRFTARSVAADGFPYFLYRKKYWR---VYASKPK--HFDLGEAPG 197
Query: 184 LNYTIXSRSSSM 219
LN + SR ++
Sbjct: 198 LNAALRSRQLAL 209
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 111 LVELETNSDLKAQLRXLYITKAKXIELHNKXSIIIYVPMPKLKAF 245
LVE+ D ++ Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 111 LVELETNSDLKAQLRXLYITKAKXIELHNKXSIIIYVPMPKLKAF 245
LVE+ D ++ Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 365 QTKEATLKDIDLCVRCYPRGLG 430
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,494
Number of Sequences: 37544
Number of extensions: 318037
Number of successful extensions: 745
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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