Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J16
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              130   4e-43
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       29   4.3  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   4.3  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   7.6  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                28   7.6  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  130 bits (314), Expect(2) = 4e-43
 Identities = 63/95 (66%), Positives = 79/95 (83%)
 Frame = +3

Query: 102 SQALVELETNSDLKAQLRXLYITKAKXIELHNKXSIIIYVPMPKLKAFQKXQIRLVRELE 281
           SQA++ELE NSD+KAQLR LYI+ AK I++  K +III+VP+P+++AFQK Q RLVRELE
Sbjct: 27  SQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQIRAFQKIQTRLVRELE 86

Query: 282 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 386
           KKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 87  KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 62.5 bits (145), Expect(2) = 4e-43
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +3

Query: 498 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 583 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 404
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 338 LRQDLTVSNKDYMFTTELLFELTDKPDLXLLKGLQFRHRHIDDDRLL 198
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 368 FVSNTSFVAGLRQDLTVSNKDYMFTTE 288
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 612 TNKVRGTRRSLRVPLASCIQTGRCPL 535
           TN+ +G+RRS R P  S  +T R P+
Sbjct: 294 TNETKGSRRSTRNPNQSPAETARTPI 319


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 338 LRQDLTVSNKDYMFTTELLFELTDKPDLXLLKGLQFRHRHIDDDRLL 198
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,632,023
Number of Sequences: 59808
Number of extensions: 361866
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)