Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J16
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 173 8e-44
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 172 1e-43
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 172 1e-43
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 169 2e-42
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 169 2e-42
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.2
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.2
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.7
At5g40640.1 68418.m04933 expressed protein 28 6.2
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 8.2
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 8.2
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 173 bits (421), Expect = 8e-44
Identities = 87/168 (51%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELE-TNSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QAL +LE TN +LK++L+ LYI +A +++ N+ +++IYVP KAF+K RLVRE
Sbjct: 24 AQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGK
Sbjct: 84 LEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
R R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 172 bits (419), Expect = 1e-43
Identities = 85/168 (50%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELE-TNSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QAL +LE TN +LK++L+ LYI +A +++ N+ +++IYVP KAF+K +RLVRE
Sbjct: 24 TQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGK
Sbjct: 84 LEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
R R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 172 bits (419), Expect = 1e-43
Identities = 85/168 (50%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELE-TNSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QAL +LE TN +LK++L+ LYI +A +++ N+ +++IYVP KAF+K +RLVRE
Sbjct: 24 TQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGK
Sbjct: 84 LEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
R R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 140 RTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 169 bits (410), Expect = 2e-42
Identities = 84/168 (50%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELE-TNSDLKAQLRXLYITKAKXIELHN-KXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QA +LE TN +LK++L+ LY+ A +++ + +I++ VP KA++K +RLVRE
Sbjct: 24 AQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGK
Sbjct: 84 LEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
R R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 140 RTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 169 bits (410), Expect = 2e-42
Identities = 84/168 (50%), Positives = 123/168 (73%), Gaps = 2/168 (1%)
Frame = +3
Query: 102 SQALVELE-TNSDLKAQLRXLYITKAKXIELHN-KXSIIIYVPMPKLKAFQKXQIRLVRE 275
+QA +LE TN +LK++L+ LY+ A +++ + +I++ VP KA++K +RLVRE
Sbjct: 24 AQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRE 83
Query: 276 LEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGK 455
LEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGK
Sbjct: 84 LEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGK 139
Query: 456 RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 599
R R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 140 RTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 365 QTKEATLKDIDLCVRCYPRGLG 430
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 365 QTKEATLKDIDLCVRCYPRGLG 430
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 484 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 383
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 243 FQKXQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 410
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 118 NSKPTPTSKPNFGXF 162
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 438 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 557
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,364
Number of Sequences: 28952
Number of extensions: 250313
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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