Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J15
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    91   2e-19
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.62 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.4  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    27   4.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   4.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   7.6  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 67/198 (33%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
 Frame = +3

Query: 252 QIGGEKXGGTRTV-PL-KRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLA 425
           ++ G K GG R V P  +    +YP   +       +  +    ++R +L  GTVCILLA
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARK--AVRPTKLRASLAPGTVCILLA 62

Query: 426 GRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFN 602
           GR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F 
Sbjct: 63  GRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FT 120

Query: 603 DDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 782
             YF              + +  FA    K     +R  DQK VD  ++ AI A P+   
Sbjct: 121 KAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN--- 173

Query: 783 LRGYLKAAFGLRSXQYPH 836
           ++ YL A+F L +   PH
Sbjct: 174 MKEYLAASFALSNGDRPH 191


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 460 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEAQIFS 326
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  ++ FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +1

Query: 589 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 12  SPGFASWLQHSLKRRPSLLPHLQVAVPHQKSPQKPRHSALGNGVXRFSKSKLF 170
           +P F     H  + R   L HL  AV    + + P H+ L N +    K+ ++
Sbjct: 159 APEFKEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALLTNAIQMGCKAAIW 211


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   FLSPGFASWLQH-SLKRRPSLLPHLQVAVPHQKSPQK 113
           FL   F   L+  S KR+PSL P   V+ P    PQK
Sbjct: 348 FLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQK 384


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 559  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 738
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 739  RL*SKPSEP 765
               +  +EP
Sbjct: 948  SSNTLSTEP 956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,525
Number of Sequences: 5004
Number of extensions: 68150
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)