Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J15
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...   116   2e-26
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...   105   3e-23
01_06_1739 - 39573754-39574194,39574485-39574664                       32   0.49 
02_02_0470 - 10700092-10700505                                         30   2.6  
10_08_0951 - 21769342-21769752                                         29   6.1  
08_01_0897 - 8839134-8839718                                           28   8.1  
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573...    28   8.1  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score =  116 bits (279), Expect = 2e-26
 Identities = 79/177 (44%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
 Frame = +3

Query: 318 PTQEKICASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 491
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 492 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDI 671
           GPF  N  P+RR+ Q YVI TST++ +    + K F+D YF              EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185

Query: 672 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSXQYPH 836
           F T+KE  K +P E +K DQK VD  +IKAI A PD   L+ YL A F LR    PH
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKPH 238


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score =  105 bits (253), Expect = 3e-23
 Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
 Frame = +3

Query: 378 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 557
           ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+TGPF  N  P+RR+ Q YVI TS
Sbjct: 70  KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129

Query: 558 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKT 731
           T++ +   K+ K F+D YF              EG ++F T+KE  K +P + +K DQK 
Sbjct: 130 TKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKA 183

Query: 732 VDEAVIKAIGARPDKKVLRGYLKAAFGLRSXQYP 833
           VD  +IKAI   PD       LK+  G R+ ++P
Sbjct: 184 VDAELIKAIEVVPD-------LKSYLGARNSRWP 210


>01_06_1739 - 39573754-39574194,39574485-39574664
          Length = 206

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 15  PGFASWLQHSLKRRPSLLPHLQVAVPHQKSPQKPRHSA 128
           P    W +H+  RRPS +P  Q  V  ++  +K RH+A
Sbjct: 5   PATKPWQKHAPPRRPSYVPLWQRRVEEEEEKKKQRHAA 42


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 393 LKIGTVCILLAGRHAGKRVVLVGILPSG 476
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 LKIGTVCILLAGRHAGKRVVLVGILPSG 476
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>08_01_0897 - 8839134-8839718
          Length = 194

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 817 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 659
           R+ +AA+R   +T  S  +  AL  A S    S+L C DG   S F    SSP
Sbjct: 22  RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73


>06_01_0767 +
           5732573-5732670,5733223-5733278,5733928-5734007,
           5735334-5735372,5735563-5735950,5736049-5737562
          Length = 724

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 752 SHRSPTRQEGAPRIPQSGLR 811
           SHR P  QEGAP  P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,900,194
Number of Sequences: 37544
Number of extensions: 519807
Number of successful extensions: 1474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)