Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J15
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 138 5e-33
U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 29 4.1
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 4.1
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 4.1
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 4.1
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 4.1
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 4.1
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 28 9.5
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 28 9.5
AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical ... 28 9.5
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 138 bits (334), Expect = 5e-33
Identities = 75/154 (48%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Frame = +3
Query: 381 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 557
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 558 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 737
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 738 EAVIKAIGARPDKKVLRGYLKAAFGLRSXQYPHR 839
++ AI P+ K L GYL F L QYPH+
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHK 214
>U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical
protein T25D1.1 protein.
Length = 612
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 3 FFLSPGFASWLQHSLKRRPSLLPHLQVAVPHQKSPQKPRHSALGN 137
FFL FA +L + +RPS Q + P+Q+ P KP ++ N
Sbjct: 155 FFLEFAFAYFLSMTTPKRPSPAVQRQNSSPYQRPPSKPARKSVKN 199
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 312 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 446
FYPT+ A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 553 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 727 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
+ +L S+ S + S+ P D +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 589
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 553 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 727 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
+ +L S+ S + S+ P D +
Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 664
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 553 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 727 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
+ +L S+ S + S+ P D +
Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 598
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 553 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 727 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
+ +L S+ S + S+ P D +
Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 742
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +1
Query: 553 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 726
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 727 RQSTRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
+ +L S+ S + S+ P D +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSSPDDDTK 589
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 625 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 759
RSA +V+ +V+ + + R + HLS+++PI +S S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = -3
Query: 159 IWRNAXLRC-----PEQSAEVFEEIFDEAPQP 79
IW N +RC P SAE F E+ AP+P
Sbjct: 798 IWANPKMRCVWTISPTNSAEFFSELKLSAPEP 829
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = -3
Query: 159 IWRNAXLRC-----PEQSAEVFEEIFDEAPQP 79
IW N +RC P SAE F E+ AP+P
Sbjct: 798 IWANPKMRCVWTISPTNSAEFFSELKLSAPEP 829
>AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical
protein R02D3.7 protein.
Length = 479
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 58 QACCRTCRLRCLIKNLLKNLGTL-LWATEXC 147
Q C C L CL KN+ +++ + W TE C
Sbjct: 15 QIRCPECALTCLQKNIYRHMTQIHNWTTEDC 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,174
Number of Sequences: 27780
Number of extensions: 408757
Number of successful extensions: 1200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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