Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J15
(839 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 126 1e-29
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 123 1e-28
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 122 2e-28
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 32 0.55
At4g30780.1 68417.m04361 expressed protein hypothetical protein ... 31 1.3
At3g10440.1 68416.m01252 hypothetical protein 31 1.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 2.2
At5g43320.1 68418.m05294 casein kinase, putative similar to case... 29 2.9
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 29 3.8
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 29 5.1
At1g80320.1 68414.m09403 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 5.1
At3g05050.1 68416.m00548 protein kinase family protein contains ... 28 6.7
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 126 bits (305), Expect = 1e-29
Identities = 88/247 (35%), Positives = 127/247 (51%)
Frame = +3
Query: 96 QKSPQKPRHSALGNGVXRFSKSKLFHKQAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKXG 275
Q++P+ R+ L GV ++S+S+++HK+ + + V
Sbjct: 5 QRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV---------- 54
Query: 276 GTRTVPLKRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 455
P+++ FYP ++ + R +K + +R ++ GTV I+LAGR GKRVV
Sbjct: 55 ---DAPVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVF 109
Query: 456 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXX 635
+ L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 110 LKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVA 165
Query: 636 XXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 815
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L
Sbjct: 166 EKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222
Query: 816 RSXQYPH 836
+ PH
Sbjct: 223 KQGMKPH 229
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 123 bits (297), Expect = 1e-28
Identities = 87/247 (35%), Positives = 126/247 (51%)
Frame = +3
Query: 96 QKSPQKPRHSALGNGVXRFSKSKLFHKQAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKXG 275
Q++ + R+ L GV ++S+S+++HK+ + + V
Sbjct: 5 QRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV---------- 54
Query: 276 GTRTVPLKRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 455
P+++ FYP ++ + R +K + +R ++ GTV I+LAGR GKRVV
Sbjct: 55 ---DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVF 109
Query: 456 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXX 635
+ L SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 110 LKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVA 165
Query: 636 XXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 815
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L
Sbjct: 166 EKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSL 222
Query: 816 RSXQYPH 836
+ PH
Sbjct: 223 KQGMKPH 229
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 122 bits (295), Expect = 2e-28
Identities = 87/247 (35%), Positives = 125/247 (50%)
Frame = +3
Query: 96 QKSPQKPRHSALGNGVXRFSKSKLFHKQAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKXG 275
+++P+ R+ L GV ++S+S+++HK+ + V
Sbjct: 5 KRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV---------- 54
Query: 276 GTRTVPLKRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 455
P+++ FYP ++ + R K + ++ ++ GTV I+LAGR GKRVV
Sbjct: 55 ---DAPVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVF 109
Query: 456 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXX 635
+ L SGLLLVTGPF N PLRR+ Q YVIGTST+I + K F+D YF
Sbjct: 110 LKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVA 165
Query: 636 XXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGL 815
EG+ A K+EK +++K DQKTVD A+IK+I A P+ KV YL A F L
Sbjct: 166 EKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV---YLGARFSL 222
Query: 816 RSXQYPH 836
PH
Sbjct: 223 SQGMKPH 229
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 625 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 795
R+ N+ S + +T+ LP+K +T S++P + S + KP + R S+++
Sbjct: 41 RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96
Query: 796 SKRPSDSARXNI 831
+++ SDSAR +I
Sbjct: 97 ARKSSDSARKSI 108
>At4g30780.1 68417.m04361 expressed protein hypothetical protein
F27D4.1 - Arabidopsis thaliana,PID:g4115371
Length = 589
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +3
Query: 42 SLKRRPSLLPHLQVAVPH---QKSPQKPRHSALGNGVXRFSKS 161
SLK+ PSLL +Q+ + H K+ + + ALG+G+ R SK+
Sbjct: 75 SLKKSPSLLELIQMKITHCGDPKAAETLKAGALGSGLKRESKT 117
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 571 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 732
S++S + S T +++ A ++ +A+ +T Q+ + L ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315
Query: 733 STRL*SKPSEPDPTRRCSADTSKRPSDSAR 822
S RL S+ EP + S +T+KR + R
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIR 345
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 291 PLKRRKSFYPTQEKICASSGGRPFS-KHVRR 380
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
kinase I (CKI2) [Arabidopsis thaliana]
gi|1103322|emb|CAA55397; contains protein kinase domain,
Pfam:PF00069
Length = 480
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 15 PGFASWLQHSLKRRPSLLPHLQVAVPHQKSPQKPRHSALGNGVXRFS 155
P F+S S K R SL P + VP + P KP A + RFS
Sbjct: 296 PQFSSGSSSSSKPRSSLRPAMNPPVPIAERPDKPSAGAGQDSRDRFS 342
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 675 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 782
ATK K P+ RK ++TV + AIG P+KKV
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV 1388
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 554 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 417
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At1g80320.1 68414.m09403 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GS-AOP loci [GI:16118889,
GI:16118887, GI:16118891, GI:16118893]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 320
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 197 NELVFSLLVEQLGFGETXHSVAQSRVPRFLRRFLMRHR 84
++ V +L E G E HSV+ S R+L R L R
Sbjct: 140 DQTVMRMLYESYGMDEKKHSVSHSESTRYLLRMLSYRR 177
>At3g05050.1 68416.m00548 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 593
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 577 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 756
T ++TS ++ + SASN + + + QKK N F ++ AK + + R SKP
Sbjct: 40 TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94
Query: 757 SEPDPTR 777
PDP R
Sbjct: 95 --PDPRR 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,378
Number of Sequences: 28952
Number of extensions: 387412
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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