Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J14
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 44 1e-05
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 30 0.34
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.60
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.79
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 28 1.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 28 1.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 28 1.4
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 27 1.8
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 5.6
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 7.4
SPCC4F11.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 25 9.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.7
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 44.4 bits (100), Expect = 1e-05
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 5/164 (3%)
Frame = +2
Query: 59 IAGEMAGSGVLALPRALVRTGWIGVPIIILMCLVAAFSGKR-LGDCWTILEERNPQLRSR 235
+A + G+G+L+LP A +TG + + I+ A+F G + C R P R
Sbjct: 28 LANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQC----AARLP----R 79
Query: 236 KRNPYAIIADQTLGKTWSVVVSMAIIVTLFGASVVYLLMAA----QXXXXXXXXXXXXXX 403
+ +A +A T + +VV +I V FG +V YL++ Q
Sbjct: 80 GKASFAAVAKHTF-PSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLR 138
Query: 404 XXXWYLIVVGAMTPLIFFNSPKDLTFTGVIAFGSTVIACILYFI 535
W + + +TPL F L T VI S + C L FI
Sbjct: 139 RQTWIVFALFVLTPLSFLKRLDSLRHTSVI---SLIALCYLVFI 179
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 29.9 bits (64), Expect = 0.34
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 4/205 (1%)
Frame = +2
Query: 35 SVGQTSMLIAGEMAGSGVLALPRALVRTGWIGVPIIILMCLVAAFSGKRLGDCWTILEER 214
S G+ +L+ G+GVL LP+A G + +L+ V + C+ +L
Sbjct: 276 SNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHI------CFLLL--- 326
Query: 215 NPQLRSRKRNPYAIIADQTLGKTWSVVVSMAIIVTLFGASVVYLLMAA---QXXXXXXXX 385
Q R + + I G + +I+V+ G S Y+ A Q
Sbjct: 327 -IQTRMKVPGSFGDIGGTLYGPHMRFAILASIVVSQIGFSSAYISFVASTLQACVKVIST 385
Query: 386 XXXXXXXXXWYLIVVGAMTPLIFFNSPKDLTFTGVIAFGSTVIACI-LYFIEMMNEVRPF 562
+ I PL L+ T +IA ++ + LYF +++
Sbjct: 386 THREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIADVFILLGILYLYFWDVITLATKG 445
Query: 563 VFRWGVHGFTDFFLAFGTIMFAFGG 637
+ + TDF L G +F + G
Sbjct: 446 IADVAMFNKTDFSLFIGVAIFTYEG 470
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 29.1 bits (62), Expect = 0.60
Identities = 35/194 (18%), Positives = 68/194 (35%)
Frame = -3
Query: 610 ESKEEIRKAVDTPTKHERTDFVHHLNKVQDAGNHRGSEGDYTSEGQILRAVKEDKRSHGS 431
+ ++I K P K + D + SE + +SE + D S S
Sbjct: 81 DDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESS 140
Query: 430 DHDQVPSANGQCWDQSE*ELFDDLSCHQQVHDRSSKEGYNDRHGHDHAPGLAESLISNNS 251
D S++ SE E + S S E ++ + + +ES S+
Sbjct: 141 SEDSDSSSSSS---DSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSED 197
Query: 250 VWVPLPAPQLRIAFLQNGPAVTESLATEGRHQAHQNDNGNTNPSSPDKGSRESQDSAACH 71
+ G + + S ++ ++ DN +++ SS + S+DS +
Sbjct: 198 SDSSSSSSDSESESSSEG-SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSS 256
Query: 70 LSGDQHTRLPNAES 29
S D + + +S
Sbjct: 257 SSSDSESESSSKDS 270
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.79
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 367 DDLSCHQQVHDRSSKEGYNDRHGHDH 290
D +S H+ H+ S + + H HDH
Sbjct: 525 DHVSQHEHTHENSQEHHHEHNHNHDH 550
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -3
Query: 610 ESKEEIRKA-VDTPTKHERTDFVHHLNKVQDAGNHRGSEGDYT--SEGQILRAVKEDKRS 440
E K+ K + TK++R V+ G+H G + DY S G +L++ ++ +R
Sbjct: 622 ELKDSFTKLDIQYNTKYKRISRNRSTKNVKRDGDHNGDDSDYVIRSLGDVLQSDEDIERW 681
Query: 439 HGSDH 425
H D+
Sbjct: 682 HLYDY 686
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 514 NHRGSEGDYTSEGQILRAVKEDKRSHGSDHDQVPSAN 404
N +EGD EG + + + +HG+DH + S N
Sbjct: 680 NVLSNEGDRNEEGSEINSSQPSTINHGTDHINIVSEN 716
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 607 SKEEIRKAVDTPTKHERTDFVHHLNKVQDAGNHRGSEGDYTSEGQILRAVKEDK 446
S I+ TK E+ + ++ +NK HR S Y S +LR VKE K
Sbjct: 50 SHRSIQSNFAVDTKGEKQNLLYGINKRPVPKYHRSSSSVYGS-APLLRIVKESK 102
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Frame = -3
Query: 262 SNNSVWVPLPAPQLRIAFLQNGPAVTESLATEGR------HQAHQNDNGNTNPSSPDKGS 101
SN W+P P QN + + G + +Q D+G+ S+PD
Sbjct: 439 SNLKPWMPHPEGYREFGREQNNATLKSHIGLNGETTELIENTDNQGDSGSFQTSTPDDSR 498
Query: 100 RESQDSAACHLSGDQ 56
E ++A ++ D+
Sbjct: 499 PEQNQASATYIRPDK 513
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/37 (21%), Positives = 19/37 (51%)
Frame = -1
Query: 660 WMVGKVEAPPNANMMVPKARKKSVKPWTPQRNTKGRT 550
W+ G + + M +P ++ ++ W P+R+ +T
Sbjct: 128 WLFGFLSTGVHCTMYIPATKEHPLRIWVPRRSPTKQT 164
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 364 DLSCHQQVHDRSSKEGYNDRHGHDH 290
D S H HD +D HGHDH
Sbjct: 12 DDSTHHHTHDYDHHN--HDHHGHDH 34
>SPCC4F11.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 80
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 607 SKEEIRKAVDTPTKHERTDFVHHLNKV 527
SK+ I +V P KH V H+N+V
Sbjct: 35 SKQSITMSVKKPYKHPNCTSVIHINRV 61
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 507 VDPKAITPVKVRSLGLLKKIRGVMAPTTI 421
+DP+ T V ++ + ++KK+ G++ T +
Sbjct: 182 IDPRVATNVDLKDIRIVKKLGGIIDDTEL 210
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 139 NGNTNPSSPDKGSRESQDSAACHLSGD-QHTRLPNAESAVLTTTVAI 2
NG TNPSS S S S++ + + L N ++ T+TV +
Sbjct: 50 NGTTNPSSNFNDSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGL 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,349
Number of Sequences: 5004
Number of extensions: 58765
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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