Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J14
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 637 TPKRKHDGAESKEEI 593
           TPKR H  A SKE++
Sbjct: 405 TPKRFHSRAASKEDL 419


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 637 TPKRKHDGAESKEEI 593
           TPKR H  A SKE++
Sbjct: 405 TPKRFHSRAASKEDL 419


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 295 RVHGDHCNPLW 327
           R+H D C+ LW
Sbjct: 132 RIHADSCDRLW 142


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 166 GRHQAHQNDNGNTNPSSPDKGSRE 95
           G  Q+H   + N++PSS   G ++
Sbjct: 805 GHQQSHHGLHINSSPSSVQSGQQQ 828


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 298 HDHAPGLAESLISNNSVWVPLPAPQL 221
           HD   G+A S ++NN  + PL +  L
Sbjct: 251 HDGIFGMALSPVTNNLYYSPLTSHSL 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,410
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)