Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J13
         (787 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.6  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   4.6  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    24   6.1  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 598 KFVVHICEPIKHYSIN*LHSSIRSFTSLQIKRYI*H 491
           + ++HI +P+   S N   S+   +T   IKRY+ H
Sbjct: 727 RLLLHIRDPLGGISSNKTDSTETVYTLNDIKRYLVH 762


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 299 GNVCSANLGQAPARQAVIFAGLPKSTICTT 388
           GN  SAN+  A  +Q++I AG  +  I  T
Sbjct: 67  GNAASANVAVADRQQSLILAGGRRQRIMWT 96


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -2

Query: 288 SFISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIA 109
           SF++  G    ++A LT  +  S AD++  L  K    V   +      R+ + +N    
Sbjct: 254 SFLACSGSAVSNLAQLTTASMQSFADRMTFLSSKFTRRVDKFEKCVVKRRQLMKQNEREV 313

Query: 108 V---KSCNKTLKS 79
           V   KSC K  +S
Sbjct: 314 VEKSKSCFKKQQS 326


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,737
Number of Sequences: 2352
Number of extensions: 15537
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)