Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J12
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 34 0.11
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494... 30 1.8
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 29 2.4
08_02_1435 + 27079184-27082006 29 3.2
08_01_0262 + 2134038-2134610 29 4.2
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 29 4.2
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 28 5.6
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 28 5.6
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 5.6
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 7.4
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 9.7
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 27 9.7
>03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSA 416
D + R + W L AR L H L +A + RG IG L+TWN V+ G A
Sbjct: 911 DEMASRGDPVVWNALLACYARHGLPEHALALAVKMRG-IGLCPDLVTWNIVVSGFA 965
>12_02_0757 +
22845825-22846032,22848331-22848498,22848929-22849434,
22849890-22850151,22851708-22851942,22854240-22854496,
22854592-22854635
Length = 559
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Frame = +3
Query: 93 LGLKGAMGDP-----GLPGVDTKCDCIGK----AVLIEINKNLTGESQFVYWNKIASHSL 245
+G+KG DP G V CD + A N ++ YW +A S+
Sbjct: 231 VGIKGIAFDPDFINNGCYYVSLTCDSVSSSNCGAAAAAAGANGAQPQRYRYWLLVAMFSV 290
Query: 246 KDMLGI----RSSQITWLHGLVNSARQTLRIHGLNVAAQ 350
KD +G+ + ++ ++ + Q ++I+GLN Q
Sbjct: 291 KDSMGMTKTFKPKEMMTIYKIALPPPQEVKIYGLNQGGQ 329
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 165 LFLCNRILYPHQAILDHPLHLLAREANRVLVVSSNS 58
L L + + YPHQ I + LLA + N++L +S +S
Sbjct: 526 LMLQSILQYPHQYIRPYVASLLAMDDNKILQISKDS 561
>08_02_1435 + 27079184-27082006
Length = 940
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 534 VRLPVTDIIFNFSSTEANLNVSVENI 611
+R + D I+NFSS A+LNVS+ NI
Sbjct: 455 IRGALPDWIWNFSSPMASLNVSMNNI 480
>08_01_0262 + 2134038-2134610
Length = 190
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 178 SINTAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVE 62
S T P S P N G P+ P S SKS GGVVE
Sbjct: 136 SSTTPSPSPSPAALPPVNGGRPVTPSSSASKS--GGVVE 172
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 208 WLSPVKFLLISINTAFPMQSHFVSTPG 128
WL + FLL++IN +P+ F S G
Sbjct: 348 WLFVIVFLLLNINGGYPLNFSFASNAG 374
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 240 SLKDMLGIRSSQI--TWLHGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGS 413
+LK ++ +RS + LH + S R+ + LN+ + + + TW DV+ S
Sbjct: 443 NLKSLITLRSFDLGENSLHN-IRSIRELTNLKDLNLCYSGKNVVSN---METWIDVLRSS 498
Query: 414 ASTDSSPFYYNVVFPDSC 467
S+ Y ++ +P +C
Sbjct: 499 LEKLSNLKYLHLYWPGTC 516
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 328 TG*MWPRKTAEPSARSFNCSRGMTS*SVLLLQTHRHSITTSYFLIRAQKRTPLL 489
T M P + A P SFN + L H H+I +Y + AQ R +L
Sbjct: 297 TNQMVPMRCACPCGTSFNAKSNANGMLMSPLGCHVHAIARNYGALTAQNRMSIL 350
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 370 VPMVPRFCAATFNPW 326
+P VP FC FNPW
Sbjct: 93 LPQVPNFCGNGFNPW 107
>02_04_0480 - 23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 262 IPSISFKEWLAILFQ*TNWLSPVKFLLISINTAFP 158
IPS + ++WL + W+ V+F+LI++ P
Sbjct: 957 IPS-TIQKWLVFSYSVVQWMQFVEFMLIAVRAELP 990
>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 355 RFCAATFNPWILKV*RAEFTNPCSHVIWLERIPSISF 245
RF + T W+++ T+PC +++ L + SISF
Sbjct: 1000 RFISLTIQEWLVQFAFFFPTSPCDYLLVLTNLSSISF 1036
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 205 LSPVKFLLISINTAFPMQSHFVSTPGNPGSPIAPFSPRS 89
L+ K L + A P+Q H V+T N G ++ F PR+
Sbjct: 275 LTQHKKLRVYCMVAHPLQPHLVATGTNIGIILSEFDPRA 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,708
Number of Sequences: 37544
Number of extensions: 397896
Number of successful extensions: 1034
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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