Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J12
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_46748| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_48340| Best HMM Match : PAN (HMM E-Value=0.4)                       28   7.5  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               27   9.9  
SB_42093| Best HMM Match : RVT_1 (HMM E-Value=2.5e-20)                 27   9.9  
SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_28572| Best HMM Match : RVT_1 (HMM E-Value=2e-20)                   27   9.9  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)                 27   9.9  
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 27   9.9  
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.9  
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11516| Best HMM Match : Lectin_C (HMM E-Value=2.9)                  27   9.9  
SB_10781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)                27   9.9  

>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 130  GNPGSPIAPFSPRSKSCIGGVVEQS 56
            G PG P+A  +P+  +CIG V E S
Sbjct: 1210 GEPGEPVARKTPQGWTCIGRVPEYS 1234


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 231 ASHSLKDMLGIRSSQITW 284
           ASHS K+ LG++S  ITW
Sbjct: 49  ASHSCKEPLGMQSGNITW 66


>SB_46748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 133 PGNPGSPIAPFSPRSKSC 80
           PG PG  I PF+PR   C
Sbjct: 112 PGRPGGYIIPFNPRGGGC 129


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 264 RSSQITWLHGLVNSARQTLRIHGLNVAAQNRGTI----GTFVQLLTWNDVIIGSASTDSS 431
           RSS +T  + L+ S R TL     +   + R  +    G   QL TW ++I+G   TD  
Sbjct: 767 RSSSVTLAY-LIKSKRWTLG-EAYSFIKERRSCVRPNRGFLKQLATWEEMILGKRFTDPD 824

Query: 432 PFYY 443
             ++
Sbjct: 825 DLWF 828


>SB_48340| Best HMM Match : PAN (HMM E-Value=0.4)
          Length = 234

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 495 CEYFDVTMETEMVVRLPVTDIIFNFSSTEANLNVSVENIELCFE 626
           CE FD+T +TE        D  F   S + +LNVSV  I  C++
Sbjct: 78  CELFDITFDTEWASL--EKDANFTHYSVKGHLNVSV--ISECYD 117


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 57   DCSTTPPIHDLLLGLKGAMGDPGLPGVD 140
            D  T P     + GL G  G+PGLPG D
Sbjct: 1378 DGPTGPKGESGIAGLDGPKGEPGLPGRD 1405


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 474 TNSTAKPCEYFD-VTMETEMVVRL-PVTDIIFNFSSTEANLNVSVENIELC 620
           +N   + C+  + VT  TE++  + PVT I+F    T   LNV    +E C
Sbjct: 82  SNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTYEELNVEKALVEFC 132


>SB_42093| Best HMM Match : RVT_1 (HMM E-Value=2.5e-20)
          Length = 325

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 77  DFYGIRGNMLNWIKAFVSNRKQSVSVNG 104


>SB_40417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 77  DFYGIRGNMLNWIKAFVSNRKQSVSVNG 104


>SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 391 DFYGIRGNMLNWIKAFVSNRKQSVSVNG 418


>SB_28572| Best HMM Match : RVT_1 (HMM E-Value=2e-20)
          Length = 388

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 77  DFYGIRGNMLNWIKAFVSNRKQSVSVNG 104


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 633 DFYGIRGNMLNWIKAFVSNRKQSVSVNG 660


>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
          Length = 769

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 521 DFYGIRGNMLNWIKAFVSNRKQSVSVNG 548


>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 794

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 118 IQDCLVWIQNAIA*EKPYXXXXXXXXXEKASSSIGTKLQATL*RICSEYVRAR 276
           +++ ++W+   ++  K Y         + +S+   T+L A L +IC E+ R R
Sbjct: 37  VKNPIIWLLQIVSYIKHYKKHRNGRFYKTSSNDYLTELSAILSKICLEFFRIR 89


>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 801

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 491 DFYGIRGNMLNWIKAFVSNRKQSVSVNG 518


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 536 NNHFRFHCNVKVFTWLSSGVRFCARIRKYDVVIEWR*VCRSRTDYDVIPREQLNERADGS 357
           +N+ +F  N+   T   + VRF     K  VV  W+  C S   + +       E    S
Sbjct: 117 SNNLKFLSNLTRHTKAVNVVRFSP---KDSVVFIWKLTCSSEHQHILDDENDNLETWTVS 173

Query: 356 AVLRGHIQPV 327
            +LRGHI+ V
Sbjct: 174 KMLRGHIEDV 183


>SB_11516| Best HMM Match : Lectin_C (HMM E-Value=2.9)
          Length = 267

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 19  DFYGIRGNMLNWIKAFVSNRKQSVSVNG 46


>SB_10781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 DMLGIRSSQITWLHGLVNSARQTLRIHG 332
           D  GIR + + W+   V++ +Q++ ++G
Sbjct: 288 DFYGIRGNMLNWIKAFVSNRKQSVSVNG 315


>SB_7525| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-08)
          Length = 256

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 SEFGSSNFKDPRVECGRAKPRNH 364
           S+FG +  K P +EC + K R H
Sbjct: 113 SDFGHTRRKCPNIECRKCKERGH 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,916,548
Number of Sequences: 59808
Number of extensions: 470800
Number of successful extensions: 1375
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)