Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J12
(647 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79339-1|CAA55897.1| 606|Drosophila melanogaster musashi protein. 30 2.4
AY119171-1|AAM51031.1| 634|Drosophila melanogaster RH49436p pro... 30 2.4
AY051802-1|AAK93226.1| 606|Drosophila melanogaster LD31631p pro... 30 2.4
AE014297-3816|AAF56478.2| 606|Drosophila melanogaster CG5099-PA... 30 2.4
AE014297-3812|AAN14056.2| 634|Drosophila melanogaster CG5099-PB... 30 2.4
BT003274-1|AAO25031.1| 313|Drosophila melanogaster LD15419p pro... 29 5.4
M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collag... 28 9.5
M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type I... 28 9.5
J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV pro-co... 28 9.5
BT003557-1|AAO39561.1| 322|Drosophila melanogaster LP07855p pro... 28 9.5
AY071323-1|AAL48945.1| 959|Drosophila melanogaster RE34633p pro... 28 9.5
AE014297-2231|AAF55333.1| 154|Drosophila melanogaster CG14890-P... 28 9.5
AE014134-1633|AAF52771.2| 959|Drosophila melanogaster CG3759-PA... 28 9.5
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 28 9.5
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 28 9.5
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 28 9.5
>X79339-1|CAA55897.1| 606|Drosophila melanogaster musashi protein.
Length = 606
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 209 VRLLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
V L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 293 VMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 341
>AY119171-1|AAM51031.1| 634|Drosophila melanogaster RH49436p
protein.
Length = 634
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 209 VRLLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
V L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 321 VMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
>AY051802-1|AAK93226.1| 606|Drosophila melanogaster LD31631p
protein.
Length = 606
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 209 VRLLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
V L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 293 VMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 341
>AE014297-3816|AAF56478.2| 606|Drosophila melanogaster CG5099-PA,
isoform A protein.
Length = 606
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 209 VRLLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
V L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 293 VMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 341
>AE014297-3812|AAN14056.2| 634|Drosophila melanogaster CG5099-PB,
isoform B protein.
Length = 634
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 209 VRLLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
V L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 321 VMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 369
>BT003274-1|AAO25031.1| 313|Drosophila melanogaster LD15419p
protein.
Length = 313
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 215 LLEQNCKPLFEGYARNTFEPDHVATWISEFGSSNFKDPRVECGRAKPR 358
L++Q K G+ TFE + V + E K+ +VEC +A+P+
Sbjct: 2 LMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPK 48
>M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collagen
protein.
Length = 1775
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
>M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type IV
collagen protein.
Length = 1775
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
>J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV
pro-collagen protein.
Length = 1775
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
>BT003557-1|AAO39561.1| 322|Drosophila melanogaster LP07855p
protein.
Length = 322
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVD 140
G KG GDPGLPG D
Sbjct: 224 GHKGERGDPGLPGTD 238
>AY071323-1|AAL48945.1| 959|Drosophila melanogaster RE34633p
protein.
Length = 959
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +3
Query: 39 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAVLIEINKNLTGESQFVY 218
C ++DCS + L + + +PG + C G +++++ +L GES ++
Sbjct: 277 CPRNLTDCSRPHCVMGDGLERSITVVNRMMPGPAIEV-CEGDEIVVDVKNHLLGESTSIH 335
Query: 219 WNKIASHSLKDMLGI 263
W+ + M G+
Sbjct: 336 WHGLHQKKTPYMDGV 350
>AE014297-2231|AAF55333.1| 154|Drosophila melanogaster CG14890-PA
protein.
Length = 154
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVD 140
G KG GDPGLPG D
Sbjct: 22 GHKGERGDPGLPGTD 36
>AE014134-1633|AAF52771.2| 959|Drosophila melanogaster CG3759-PA
protein.
Length = 959
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +3
Query: 39 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAVLIEINKNLTGESQFVY 218
C ++DCS + L + + +PG + C G +++++ +L GES ++
Sbjct: 277 CPRNLTDCSRPHCVMGDGLERSITVVNRMMPGPAIEV-CEGDEIVVDVKNHLLGESTSIH 335
Query: 219 WNKIASHSLKDMLGI 263
W+ + M G+
Sbjct: 336 WHGLHQKKTPYMDGV 350
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGK 164
G++G G+PG PG++ K C G+
Sbjct: 149 GVQGPAGNPGAPGINGKDGCDGQ 171
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,301,297
Number of Sequences: 53049
Number of extensions: 682854
Number of successful extensions: 1921
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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