Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J12
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 30 1.6
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.6
Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 29 2.1
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 2.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 2.1
U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 29 3.8
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 3.8
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 28 5.0
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 6.6
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 6.6
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 28 6.6
AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical ... 28 6.6
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 6.6
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 8.7
U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical... 27 8.7
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 21 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV 170
D+S+ C + C PP G +GA G PG PGVD K GK++
Sbjct: 87 DNSQCHCGLQSQGCPDGPPG---ARGPQGAPGLPGAPGVDGKPGVDGKSL 133
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 57 DCSTTPPIHDLLLGLKGAMGDPGLPGVD 140
DC PP G+KG G+PG PG D
Sbjct: 169 DCPPGPPGPAGSAGVKGPSGNPGAPGTD 196
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 24 DSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 134
D T DC T PP G KG G+PG PG
Sbjct: 174 DESPTAADFCFDCPTGPPGPPGKQGPKGPNGEPGAPG 210
>Z92806-1|CAB07258.1| 802|Caenorhabditis elegans Hypothetical
protein K10G4.1 protein.
Length = 802
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 294 LVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSASTDSSPFYY-NVVFPDSC 467
++ LR+H L V R I LL+W D+I +PF+ V+ P++C
Sbjct: 232 MLEKRHHKLRVHFLEVYFWKRPLIELAASLLSWCDLIDLKGIVLETPFFKGTVIEPEAC 290
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 181 ISINTAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDV 41
++++TA +V T NPG P P+ +SC+ +++ ++
Sbjct: 368 VTVSTAQWPSDSYVPTECNPGGPSGPWDASGESCLDWYKANTILIEI 414
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 93 LGLKGAMGDPGLPGVDTK-CDCIGKAVLIE 179
+G G G+PG+PG D C C + L+E
Sbjct: 260 MGTPGGPGEPGIPGSDAAYCPCPKREALVE 289
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 21 DDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPG 134
DDS+ S DC PP G KG G PG PG
Sbjct: 195 DDSQAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAPG 232
>U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical
protein K07E3.2 protein.
Length = 771
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 476 RFCARIRKYDVVIEWR*VCRSRTDYD 399
+FC Y+ + +WR + SRT+YD
Sbjct: 124 QFCFNQSDYNTIYQWRAMVASRTEYD 149
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +3
Query: 441 YNVVFPDSCTETNSTAKPCEYFDVTMETEMVVRLPVTDIIFNFSSTEANLNV 596
Y SC T AKPC Y T + V + + N + + NL V
Sbjct: 106 YGESLEGSCPSTYGPAKPCFYVAHTFFANITVTGGLNKVTINLGNRKVNLTV 157
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTK-CDCIGKAVLIEINKNL 194
G+ G G+PG PG D C C ++ ++ +N+ +
Sbjct: 250 GVPGTPGNPGAPGGDAAYCPCPARSSVMAVNRRV 283
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTK-CDCIGKAVLIE 179
G+ G G+PGLPG D C C + +E
Sbjct: 256 GVVGIPGEPGLPGSDASYCQCPDRTPTVE 284
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKCDCIGKAVL 173
GL+G G+PG PG CD VL
Sbjct: 351 GLQGRPGNPGAPGSPASCDHCAPPVL 376
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKC 149
GL+G GD GLPG++ +C
Sbjct: 704 GLRGEHGDNGLPGLEGEC 721
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKC 149
GL+G GD GLPG++ +C
Sbjct: 961 GLRGEHGDNGLPGLEGEC 978
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 96 GLKGAMGDPGLPGVDTKC 149
GL+G GD GLPG++ +C
Sbjct: 960 GLRGEHGDNGLPGLEGEC 977
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 39 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVD 140
C +C PP G KG++G+PG PG D
Sbjct: 88 CAEPTKNCPAGPP------GEKGSLGNPGQPGPD 115
>AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical
protein ZK484.7 protein.
Length = 344
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 157 MQSHFVSTPGNPGSPIAPFSPRSKSC 80
+ ++FVSTP NP I +P KSC
Sbjct: 107 IHANFVSTPSNPRRFICTQAPLDKSC 132
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 39 CTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGV 137
C ++ C PP G GA G+PGLPG+
Sbjct: 89 CGAQSQGCPAGPPGPP---GYPGAQGEPGLPGI 118
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Frame = +3
Query: 81 HDLLLGLKGAMGDPGLPGVDTK-CDC 155
HD G G G PG PG D C C
Sbjct: 251 HDAFPGTPGQAGKPGAPGKDANYCPC 276
>U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical
protein ZK430.8 protein.
Length = 724
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +3
Query: 15 VTDDSEKTCTSKISDCSTTPPIHDLLLGLKGAMGDPGLPGVDTKCDCIGKAV---LIEIN 185
++ D KT ++C T P+ + + DP L +C + ++ +E
Sbjct: 269 MSHDMSKTTLQPSANCKTCDPVPSKCMPIPIGEKDPNLGFKSKQCLKVSRSAPICRVEPR 328
Query: 186 KNLTGESQFVYWNKIASHSLKDMLGIRSSQITWL 287
+ L + ++ + I SLKD+ R + +L
Sbjct: 329 EQLNENTAYIDGSMIYGSSLKDLHKFRDGRTGFL 362
>AF024503-13|AAG24083.1| 347|Caenorhabditis elegans Hypothetical
protein F31F4.15 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 502 YSHGLAVEFVSVHESGNTTL**NGDESVEAE 410
Y+HG +++ E+G TT+ NG + +EAE
Sbjct: 105 YNHGPQIKYTEA-ENGGTTVKCNGQKRIEAE 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,260,170
Number of Sequences: 27780
Number of extensions: 361133
Number of successful extensions: 1919
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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