Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J12
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.21 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 393  NDVIIGSASTDSSPFYYNVVFPDSCTETNSTAKPCEY 503
            ND I+  +S  SS FY + ++  S +  N   KP EY
Sbjct: 946  NDYIVDESS--SSSFYSSFLYKSSESSCNPDQKPTEY 980


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 511 LQWKRKWLFDCRSPTSS 561
           +QW +  +FDCR  T++
Sbjct: 130 IQWSKLQVFDCRYVTTT 146


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 527 FRFHCNVKVFTWLSSGVRFCARIRKYDVVIEW 432
           F  + NV  F     G+RF     KY ++  W
Sbjct: 43  FNVYWNVPTFMCHKYGLRFEEVSEKYGILQNW 74


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 287 TWISEFGSSNFKDPR 331
           TWI+     NFKD +
Sbjct: 423 TWIAGLNEENFKDAK 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,236
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)