Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J12
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71480.1 68414.m08261 nuclear transport factor 2 (NTF2) famil... 33 0.16
At2g45930.1 68415.m05711 expressed protein contains Pfam profile... 29 2.0
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova... 29 2.0
At4g03500.1 68417.m00477 ankyrin repeat family protein contains ... 29 2.7
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote... 29 2.7
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 29 3.5
At1g69100.1 68414.m07907 aspartyl protease family protein contai... 28 4.7
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 28 6.1
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 28 6.1
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p... 27 8.1
At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4 fa... 27 8.1
>At1g71480.1 68414.m08261 nuclear transport factor 2 (NTF2) family
protein contains Pfam domain, PF02136: Nuclear transport
factor 2 (NTF2) domain
Length = 216
Score = 33.1 bits (72), Expect = 0.16
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +3
Query: 366 GTFVQLLTWNDVIIGSASTDSSP----FYYNVVFPDSCTETNSTAKPCEYFDVTMETEMV 533
G + T NDV+ +A T +S FY V D + T+ A+ C Y D+ + V
Sbjct: 51 GPAAKAATANDVVPETAPTSASEVVSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFV 110
Query: 534 VRLPVTDIIFNF-SSTEANLNVSVENI 611
R + D F ST +L +++I
Sbjct: 111 GRKAILDFFGKFIESTSTDLQFVIDDI 137
>At2g45930.1 68415.m05711 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 239
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 402 IIGSASTDSSPFY-YNVVFPDSCTETNSTAKPCEYFDVTMETEMVVR 539
+ S+ST ++P+ ++++ SC + YFD E E++VR
Sbjct: 28 MFSSSSTTTNPYLMFSLIHYGSCLDDIDVTSTIHYFDPVKEDEIIVR 74
>At1g06920.1 68414.m00735 ovate family protein 58% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 315
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Frame = +1
Query: 442 TTSYFLIRAQKRTPLLSHV------NTL-TLQWKRKWLFDCRSPTSSLISA 573
+TSYF R++ RT S + N+L +Q KRK ++ P+SS++SA
Sbjct: 56 STSYFFNRSRSRTSFESRILQISPRNSLHNIQSKRKTVYKPSPPSSSIVSA 106
>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 652
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 270 SQITWLHGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSASTDSSPFYYNV 449
S TW H + R + L+VA +N + Q LTW +I A S+P N+
Sbjct: 404 SMFTWDHRVDLKKRNYIGFTALDVAEENIDSSYIVHQRLTWMALINAGAPKSSTPITENL 463
>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 670
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 381 LLTWNDVIIGSASTDSSPFYYNVVFPDSCTETNS---TAKPCEYFDVTMETEMVVRLPVT 551
+L + ++ S+STDS + DS + NS T PC++ V+ V RL +
Sbjct: 17 ILLQSCLLSSSSSTDSETLLNFKLTADSTGKLNSWNTTTNPCQWTGVSCNRNRVTRLVLE 76
Query: 552 DI 557
DI
Sbjct: 77 DI 78
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 166 AFPMQSHFVSTPGNPGSPIAPFSPRS 89
+FP PGNPG+PI P +P S
Sbjct: 194 SFPRNPGSPEFPGNPGAPIIPRNPGS 219
>At1g69100.1 68414.m07907 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 343
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 288 HGLVNSARQTLRIHGLNVAAQNRGTIGTFVQLLTWNDVIIGSASTDSSPFYYNVVFPDSC 467
HG ++ +L+ H LNV + G + F ++ + ++ +G S P +NVVF
Sbjct: 14 HGSNDTVSISLKRHTLNVGGTSFGGLKNFDGVVFYGEISVG-----SPPQKFNVVFDTGS 68
Query: 468 TE 473
T+
Sbjct: 69 TD 70
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 408 GSASTDSSPFYYNVVFPDSCTETNSTAKPCEYFDVTMETEMVVRLPVTDIIFN 566
G+ +SSP +++ FP T+ K E + V +E VV + TD +F+
Sbjct: 596 GTVLQNSSPMFHHFCFPLHITQGCDVLKLAEVYHVNLEEGDVV-IAATDGLFD 647
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 205 LSPVKFLLISIN---TAFPMQSHFVSTPGNPGSPIAPFSPRSKSCIGGVVEQSLIFDVQV 35
L+P + +L + N +++ + STP P + SPR KS + ++E S+ Q
Sbjct: 213 LTPFRNMLQAKNAFESSYEQNGNGNSTPKTPANLQKFSSPRPKSPVSPIIEDSVFSCKQR 272
Query: 34 F-SESSVTI 11
F SESS+ +
Sbjct: 273 FSSESSIDL 281
>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
putative similar to laccase LAC2-4, Liriodendron
tulipifera, EMBL:LTU73106 [GI:1621467]
Length = 577
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = -2
Query: 298 TNPCSHVIWLERIPSISFKEWLAILFQ*TNWLSPVKFLLISINTAFPMQSHFVSTPGNPG 119
TNPC+H + + A ++ P K LL S + QSH V +P P
Sbjct: 375 TNPCNHKN-NQTCQGPTNTTMFAASISNISFTMPTKALLQS---HYSGQSHGVYSPKFPW 430
Query: 118 SPIAPFS 98
SPI PF+
Sbjct: 431 SPIVPFN 437
>At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4
family protein low similarity to SP|P25441 DNA-directed
RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6) (C53)
(RNA polymerase C subunit 4) {Saccharomyces cerevisiae};
contains Pfam profile PF05132: RNA polymerase III RPC4
Length = 272
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 162 KAVLIEINKNLTGESQFVYW-NKIASHSLKDMLGIRSSQITWLHGLVNSARQTLRIHGLN 338
K ++E N N S+ + N+ + K + +SQ+ WL G+VNS R ++ N
Sbjct: 27 KPEVVEDNSNSAQASELLRRVNERSLRKPKADKKVPASQVAWLGGVVNSTRSNKYLNRSN 86
Query: 339 VAAQNRGT 362
A + T
Sbjct: 87 GAYGSTST 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,184
Number of Sequences: 28952
Number of extensions: 326351
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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