Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J10
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   4.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   4.7  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   6.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   6.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   6.1  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 TCHPYQYLPSTALRSPAST 213
           +C P  YLP +  RSPA T
Sbjct: 205 SCSPEPYLPLSPTRSPART 223


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 133 QLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIIS 243
           Q P +P P+  P    PSTA       H S +   +S
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVS 133


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 115 CPCRTLQLPATPFPTCHPYQYLP 183
           C  R +Q    PFP  H Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 92  RGGRPVCGAPAVRCNCRLPPFLRVILISTYRLQLCVHRLLP 214
           R G+ V G   V  +  L PF+     ST  L L   RL+P
Sbjct: 286 RNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVP 326


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 152 FLRVILISTYRLQLCVHRLLPT 217
           FL VI I+ Y+L+  VHRL  T
Sbjct: 347 FLNVIGIAAYKLEDPVHRLFVT 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,363
Number of Sequences: 5004
Number of extensions: 25474
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)