Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J10
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0782 - 6056440-6057954 30 0.64
01_01_0779 - 6030245-6031780 30 0.64
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 29 1.5
02_05_0814 - 31970558-31971126,31971242-31971413 28 2.6
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 28 3.4
07_03_0441 + 18256103-18258076 28 3.4
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 28 3.4
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 28 3.4
12_01_0733 - 6562911-6563117 27 4.5
08_02_0960 + 23058393-23059739 27 5.9
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 27 5.9
07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237 27 5.9
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 5.9
11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478 27 7.8
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 7.8
>01_01_0782 - 6056440-6057954
Length = 504
Score = 30.3 bits (65), Expect = 0.64
Identities = 21/94 (22%), Positives = 40/94 (42%)
Frame = +3
Query: 15 PVELSKXQSLKMFKAFLITMLALFACAAADPYVVPLPYAATAGYPLSYVSSLSVPTVYSS 194
P+ K +K KA ++ A P++ + T Y + +L +P++Y S
Sbjct: 352 PITADKIAEMKYTKAVAREVVRHRPPATLMPHIALQNFQLTESYTIPK-GTLVLPSMYES 410
Query: 195 AFTGFYPQIAYANDYIFRK*NVKVNTYIWNFFCY 296
+F GF+ A+ + F + + Y NF +
Sbjct: 411 SFQGFHDPDAFDPERFFSEARREDVVYKRNFLAF 444
>01_01_0779 - 6030245-6031780
Length = 511
Score = 30.3 bits (65), Expect = 0.64
Identities = 21/94 (22%), Positives = 39/94 (41%)
Frame = +3
Query: 15 PVELSKXQSLKMFKAFLITMLALFACAAADPYVVPLPYAATAGYPLSYVSSLSVPTVYSS 194
P+ ++K +A ++ A P++ + TA Y + ++ P+VY S
Sbjct: 359 PITAEMMSAMKYTQAVAREVVRYHPPATLVPHIAVEAFQLTAQYTIPK-GTMVFPSVYES 417
Query: 195 AFTGFYPQIAYANDYIFRK*NVKVNTYIWNFFCY 296
+F GF A+ D F + + Y NF +
Sbjct: 418 SFQGFQDADAFDPDRFFSEARREDVVYKRNFLAF 451
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 62 FDHNAGSLRLRGGRPVCGAPAVRCNCRLPPFLRVILI-STYRLQLCVHRLL 211
FD + + + P CG P N L FL + I T RL+L + LL
Sbjct: 30 FDLKSSLITMAQASPFCGKPNEDANAHLQQFLEICSIPDTVRLRLFLFSLL 80
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 82 SSPARRPTRMWCPCRTLQLPATPFPTCHPYQYLPSTALRSPASTHKS 222
SSP P T P+TP PT PY P T +P +T S
Sbjct: 148 SSPTPTTPNPSTPTPTTPYPSTPMPTT-PYPSTPMTTPTTPYTTPTS 193
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = +1
Query: 67 SQCWLSSPARRPTRMWCPCRTLQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIISF 246
S C P P R PC T P+ P TCH PA + + ++
Sbjct: 379 SCCVFGLPWLAPCR---PCPTAGAPSPPNGTCHSLNRF--RRFHCPAGHYNDLASLFLNI 433
Query: 247 VNKMLK*IHTSGTSSV 294
+ ++ ++++GT+ V
Sbjct: 434 NDDAIRNLYSTGTNDV 449
>07_03_0441 + 18256103-18258076
Length = 657
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 124 RTLQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSS 291
R+ L P P+ H Y+ LPS A+ + +H H ++ +V+ + H+S +SS
Sbjct: 100 RSPHLLPNPLPSLHFYRSLPS-AVAADLLSHPHH--LVSCYVSLLRSFAHSSSSSS 152
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 62 FDHNAGSLRLRGGRPVCGAPAVRCNCRLPPFLRVILISTYR 184
FD N+ + + P CG P N L FL++ + T +
Sbjct: 30 FDLNSSLITMAQASPFCGKPNEDANAHLQQFLKICSMYTIK 70
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 62 FDHNAGSLRLRGGRPVCGAPAVRCNCRLPPFLRVILISTYRLQ 190
FD + + + RP CG P N L FL + STY ++
Sbjct: 125 FDLKSSLITMAQARPFCGKPNEDANAHLQQFLEI--CSTYTIK 165
>12_01_0733 - 6562911-6563117
Length = 68
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 133 QLPATPFPTCHPYQY 177
QLP TP+PTC+P QY
Sbjct: 46 QLP-TPYPTCNPGQY 59
>08_02_0960 + 23058393-23059739
Length = 448
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 88 PARRPTRMWCPCRTLQLPATPFPTC 162
PAR T PCR+ A P+P C
Sbjct: 136 PARSATYRLVPCRSPLCAALPYPAC 160
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 136 VAAYGRGTTYGSAAAQAKRASIVIKNALNILRLXHLLS 23
VAA G T Y + AA A A V+ +A L H L+
Sbjct: 193 VAARGAATAYATGAADANAAENVLPSATAAQHLHHPLA 230
>07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237
Length = 194
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 142 ATPFPTCHPYQYLPSTALRSPASTHKSHTQMI 237
A P P+ HP L +TA SPA+ + + I
Sbjct: 25 APPLPSLHPAAQLMTTAFSSPAAAAAARVRRI 56
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 100 PTRMWCPCRTLQLP 141
P RMWC CR + LP
Sbjct: 277 PGRMWCHCRMVYLP 290
>11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478
Length = 388
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 56 GVFDHNAGSLRLRGGRPVCGAPAVRCNCRLPPFLRVILISTYRLQ 190
G FD + + + P CG P N L FL + STY ++
Sbjct: 28 GDFDLKSSLITMAQASPFCGKPYEDANAHLQQFLEI--CSTYTIK 70
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +1
Query: 82 SSPARRPTRMWCPCRTLQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMII 240
SS R P CP + A PF P P A +P ++ S + ++
Sbjct: 310 SSAQRAPAACNCPAHVQRPQARPFNNVPPTPLRPRPATAAPTNSGNSFDRTLV 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,795,932
Number of Sequences: 37544
Number of extensions: 180404
Number of successful extensions: 692
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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