Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J10
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)          29   1.1  
SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)                      28   2.6  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   2.6  
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)                   28   2.6  
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)                    27   8.1  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)
          Length = 297

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +1

Query: 130 LQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVTINKI 309
           +++P  P P  H  +Y  +   RS +   + H Q +    +++++ + T     VT+N++
Sbjct: 78  VRVPGKPRPKWHSDKYAETPDARSLSQGCRPHLQHLYFSEDRVVRLLFTLSDRLVTVNRV 137

Query: 310 YCC 318
             C
Sbjct: 138 VGC 140


>SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)
          Length = 326

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 151 FPTCHPYQYLPSTALRSPASTHKSHTQMIISFVN 252
           F    P  YLP T   SPA +H S T   + F N
Sbjct: 84  FAAAPPCTYLPYTTSLSPALSHLSKTSSFLLFNN 117


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +3

Query: 159 VSSLSVPTVYSSAFTGFYPQI--AYANDYIFRK*NVKVNTYIWN--FFCYD 299
           + S+S+P   S    GF PQ+  +Y   +I R+ N+   T I+N  +F YD
Sbjct: 608 IPSVSMPVQSSQVVLGFLPQVTDSYLTRHIDRELNLS-KTAIYNSVYFAYD 657


>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
          Length = 327

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 126 YAATAGYPLSYVSSLSVPTVYSSAFTGFYPQ 218
           Y A  GYP+     +  P  Y  A  G YPQ
Sbjct: 295 YPAQGGYPMQPQGQMPPPPSYGQATAGQYPQ 325


>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
          Length = 406

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 105 PYVVPLPY---AATAGYPLSYVSSLSVPTVYSSAFTG 206
           PY  P P    AA A YP +YVSS +  T  +S+F G
Sbjct: 104 PYPAPYPATYSAAPAAYPAAYVSSAT--TYDTSSFGG 138


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 130 LQLPATPFPT----CHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVT 297
           L  P+TP PT     H Y  L    L +P++   +H +   ++  +    +HT  T + T
Sbjct: 52  LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 130 LQLPATPFPT----CHPYQYLPSTALRSPASTHKSHTQMIISFVNKMLK*IHTSGTSSVT 297
           L  P+TP PT     H Y  L    L +P++   +H +   ++  +    +HT  T + T
Sbjct: 52  LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,925
Number of Sequences: 59808
Number of extensions: 205598
Number of successful extensions: 769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)