Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_J10
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81531-6|CAB04317.2| 330|Caenorhabditis elegans Hypothetical pr... 33 0.062
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 1.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 1.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 1.3
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 27 4.1
U80955-7|AAG01555.1| 116|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 27 4.1
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 27 4.1
Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical pr... 27 7.1
U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic acety... 27 7.1
U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic acety... 27 7.1
AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical ... 27 7.1
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 26 9.4
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 26 9.4
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 26 9.4
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 26 9.4
>Z81531-6|CAB04317.2| 330|Caenorhabditis elegans Hypothetical
protein F36D3.6 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.062
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 15 PVELSKXQSLKMFKAFLITMLALFACAAADPYVVPLPYAATAGYPLSYVSSLSVPTV 185
P +SK + + F I + + P+V+ YAA AGYPL + L VPT+
Sbjct: 42 PSNMSKVKFSMLVMHFTIFWIDFYWNILCIPFVI---YAAVAGYPLGVIVYLGVPTI 95
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 LRGGRPVC--GAPAVRCNCRLPPFLRVILISTYRLQLCVHRLL 211
+R G+ C GA RC+ LP +LR+ R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 LRGGRPVC--GAPAVRCNCRLPPFLRVILISTYRLQLCVHRLL 211
+R G+ C GA RC+ LP +LR+ R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 LRGGRPVC--GAPAVRCNCRLPPFLRVILISTYRLQLCVHRLL 211
+R G+ C GA RC+ LP +LR+ R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 89 LRGGRPVC--GAPAVRCNCRLPPFLRVILISTYRLQLCVHRLL 211
+R G+ C GA RC+ LP +LR+ R CVH L+
Sbjct: 2098 VRTGQCHCQEGATGSRCDQCLPSYLRIPTYGCRRCDECVHHLI 2140
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 94 RRPTRMWCPCRTLQLPATP-FPT--CHPYQYLPSTALRSPAST 213
+R R W C QLP P +PT YQ+ P+ +P T
Sbjct: 465 QRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTTTPKPT 507
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 94 RRPTRMWCPCRTLQLPATP-FPT--CHPYQYLPSTALRSPAST 213
+R R W C QLP P +PT YQ+ P+ +P T
Sbjct: 465 QRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTTTPKPT 507
>U80955-7|AAG01555.1| 116|Caenorhabditis elegans Hypothetical
protein T04C9.2 protein.
Length = 116
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 122 AVRCNCRLPPFLRVILIST 178
A RC CR PPFL + + ST
Sbjct: 36 ASRCRCRRPPFLSIRIGST 54
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 94 RRPTRMWCPCRTLQLPATP-FPT--CHPYQYLPSTALRSPAST 213
+R R W C QLP P +PT YQ+ P+ +P T
Sbjct: 465 QRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTTTPKPT 507
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 94 RRPTRMWCPCRTLQLPATP-FPT--CHPYQYLPSTALRSPAST 213
+R R W C QLP P +PT YQ+ P+ +P T
Sbjct: 465 QRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTTTPKPT 507
>Z74039-9|CAA98507.1| 564|Caenorhabditis elegans Hypothetical
protein K03B8.9 protein.
Length = 564
Score = 26.6 bits (56), Expect = 7.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 84 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 257
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 258 VKVNTYI 278
+ + T +
Sbjct: 304 LGITTLL 310
>U19747-1|AAA92689.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit precursor protein.
Length = 564
Score = 26.6 bits (56), Expect = 7.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 84 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 257
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 258 VKVNTYI 278
+ + T +
Sbjct: 304 LGITTLL 310
>U19746-1|AAA92688.1| 564|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 564
Score = 26.6 bits (56), Expect = 7.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 84 FACAAADPYVVPLPYAATAGYPLSYVSSLSVPT--VYSSAFTGFYPQIAYANDYIFRK*N 257
+AC A +P+V+ PL Y+ +L +PT + A TGF+ A +D K N
Sbjct: 246 YACCA-EPWVILQASLVIQRKPLYYLVNLIIPTSIITLVAITGFFTP-ASTDDDRTEKIN 303
Query: 258 VKVNTYI 278
+ + T +
Sbjct: 304 LGITTLL 310
>AL021175-5|CAA15967.1| 357|Caenorhabditis elegans Hypothetical
protein Y6E2A.6 protein.
Length = 357
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 48 MFKAFLITMLALFACAAADPY--VVPLPY---AATAGYPLSYVSSLSVPT 182
M K + +L C D Y ++ +PY +A AGYPL + L +PT
Sbjct: 45 MEKVKISILLMHLTCFWLDIYFNILSIPYMIHSAAAGYPLGILFHLGLPT 94
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 124 RTLQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 261
R +QLP TP T P + P +R+P + F+N+ L
Sbjct: 654 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 696
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 124 RTLQLPATPFPTCHPYQYLPSTALRSPASTHKSHTQMIISFVNKML 261
R +QLP TP T P + P +R+P + F+N+ L
Sbjct: 658 RNVQLPFTPADTHKPIKVAPKEPVRNPLLKERPSAN---GFINRRL 700
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 52 LRRF*SQCWLSSPARRPTRMWC 117
L F +CW +PA RPT C
Sbjct: 270 LSNFYKRCWSDNPASRPTSADC 291
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 42 LKMFKAFLITMLALFACAAADPYVV 116
+K F FLIT L AAAD ++V
Sbjct: 1 MKQFFEFLITTFLLLGLAAADEHIV 25
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 42 LKMFKAFLITMLALFACAAADPYVV 116
+K F FLIT L AAAD ++V
Sbjct: 1 MKQFFEFLITTFLLLGLAAADEHIV 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,454,661
Number of Sequences: 27780
Number of extensions: 149977
Number of successful extensions: 552
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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