Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_J10
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31250.1 68417.m04436 leucine-rich repeat transmembrane prote...    31   0.41 
At2g02955.1 68415.m00243 expressed protein ; expression supporte...    30   0.71 
At5g48900.1 68418.m06049 pectate lyase family protein similar to...    28   2.2  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    28   2.9  
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    28   2.9  
At5g13500.3 68418.m01559 expressed protein predicted protein At2...    27   5.0  
At5g13500.2 68418.m01558 expressed protein predicted protein At2...    27   5.0  
At5g13500.1 68418.m01557 expressed protein predicted protein At2...    27   5.0  
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    27   5.0  
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox...    27   5.0  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    27   6.6  
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote...    26   8.7  

>At4g31250.1 68417.m04436 leucine-rich repeat transmembrane protein
           kinase, putative receptor kinase, Petunia inflata,
           Patchx:G498278
          Length = 676

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 95  GGRPVCGAPAVRCNCRLPPFLRVILISTYRLQLCV 199
           G + +CGAP + C    PPF  V L++   L + V
Sbjct: 224 GNKGLCGAPLLPCRYTRPPFFTVFLLALTILAVVV 258


>At2g02955.1 68415.m00243 expressed protein ; expression supported
           by MPSS
          Length = 666

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 9   SCPVELSKXQSLKMFKAFLITMLALFACAAADPYVVPLPYAATAGYPLSYVSSLSVP 179
           +CPV++S     + F+     ML   A   AD   +PLP     G   +Y+  LS+P
Sbjct: 285 ACPVKVSIMA--RPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIP 339


>At5g48900.1 68418.m06049 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa];
           non-consensus AG donor splice site at exon 2
          Length = 417

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 38  KSQNV*GVFDHNAGSLRLRGGR 103
           KS ++ GV  +NAG+L  RGGR
Sbjct: 394 KSSSLVGVITYNAGALNCRGGR 415


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 161 HVGKGVAGSCSVRQGHHIRVGRRAGEESQHCDQKRLKHFETL 36
           H G   + SC +R  +++R G + G  ++H ++K + H + L
Sbjct: 43  HTGLRCSKSCRLRWTNYLRPGIKRGNFTEH-EEKTIVHLQAL 83


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 150 LSYVSSLSVPTVYSSAFTGFYPQIAYAND 236
           LSY SS    T   S+F+G+YP + + ND
Sbjct: 300 LSYTSSCKAKT---SSFSGYYPTLPFYND 325


>At5g13500.3 68418.m01559 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At5g13500.2 68418.m01558 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At5g13500.1 68418.m01557 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 108 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 215
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 100 PTRMWCPCRTLQLP 141
           P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264


>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
           2,3-epoxysqualene--cycloartenol cyclase /
           (S)-2,3-epoxysqualene mutase identical to cycloartenol
           synthase [SP:P38605 | GI:452446] [PMID:7505443]
          Length = 759

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 100 PTRMWCPCRTLQLP 141
           P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264


>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 148  PFPTCHPYQYLPSTALRS---PASTHKSHTQMIISFVNKMLK*IHTSGTSSVTI 300
            P P  HP  + P++   S   PA+TH     + +  V+  +  ++   T SV I
Sbjct: 905  PIPIAHPLYFAPASINLSSILPATTHSPSAVLYVGVVDSNIVLVNQGLTLSVKI 958


>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1173

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 150 LSYVSSLSVPTVYSSAFTGFYPQ 218
           + ++ SL V T++S+ FTG +PQ
Sbjct: 332 IGFLESLEVLTLHSNNFTGEFPQ 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,834,305
Number of Sequences: 28952
Number of extensions: 130581
Number of successful extensions: 489
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)